BS12133.complete Sequence
1634 bp assembled on 2007-10-31
GenBank Submission: FJ637081
> BS12133.complete
GAAGTTATCAGTCGACATGAATCTAGGCCACTGGAATTTTCTCCTAGCTC
TAATCAGTTTACAAACGTTTTTTAACGCCTCCGCACAGATAAGCACTGTA
AATAACAGTTCGAAGGGATCAAACAACTCAAATATTTTCCATGAAGACAC
ATTCAATAGCACTTCGATTGACGTTCTGGACGCCTCAATACATTCAACAC
TGGTTGTACCTCAAACATATTCGACAGAAGCTGCAACAATATCAGGTGCT
AGGTTCGCAACCTCTGTTCCTGTTCAAAGTCCTGTAGACAACCCGTTAGA
TCCGGCGGACTGTTCTCAACGGGAAAAGTACAGAAAGCAACCAGTTGCAA
CACCATCGTCTCGTTTAAGAAAATGCTGCCCACATGGAGAAAACTTAAAT
ATATATCGGGAAAATCAAAGCGATTCGATGTGCGACAACGGGCTCTTAAG
CTTCGAACCGACTATAATAAGTGCAGTTCTGTTCGATAACTGCATTGAAG
ATTTGGAGGTTGAGACTACGCTCGACTACGACATTGGAAATCCGTGCAAC
AGTTCTCTTTTGTACGACGACAAAGACGATGTTTTCTTTGTTCTGCAAGA
CGGTTCGTTATTAATCATCGACAAATTTGGCAACGAATCATACACTGTGA
AGGAACATTATTGCTTGGATATTGATAAGTCAGGACACTTGTTTGCCTTT
ACATGTGTAACCCAAGTGGAAGAACAAATTGCCTTCGCAAAAGTCGTTTT
TGTTGCCGTTCTTATGCTTATATCTATGCCCTGCCTGCTATTAGTTAGTT
ATTTGCACATGACACTTCGTTTATTGCGTAACTTGCATGGTCTCTCGCTA
AGTTTGATGTCTCTGTGCTTGGCGTCTGGATACTTTGTGCACTCCGTTGT
GCACATCTATGGGATCCCGAACCAAGGGTTCATTGGCTACGTCATACAGT
TTTGTATTTTAAGTTACTTCTTCTGGTACTTGTGCATATGCTTCAATGTT
CTTTTGAATGTGTGGTACAAGTTGCCTTGCTGCATTCAATGCTCAAAGAG
TTGGGCCACCTTTAATTTTGCGTGTTACGCTGTTTTTGCCTTTTCCGGAC
CGGCCACAATAGTTGCACTAACTGTTCAAAAAGGACTCCCAGGAATGCCG
TCTTACTTTCTGCAAGGCCTAACTGAATCCATCCGAGATTCCCAACGTTA
CTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGCTTAACA
TCATATCGTTCTTCGGATTTCAACGTATAAGCGGCTACGCCAAGGCTGAA
AAAAACATTCAGGAGCGAAAATGCTTGTTTGACCAACAAAAATATGAAGA
TGTTAAAAAAGACGCTAAATGTGTCAGCTTACTTGGAATAATAATGGTCG
TTAGCTGGCTGCTCGAAATAATAACATTTTACTCGGGATCGAATTCAAAT
TACCTGATACTCTGTGACATGGTGAATGGACTCCAGGGAGTTTGGGTACT
GCTCATTTTTCTAGTCGTGCGCAGGCGTCGCACAATAATATTAAGGTGGT
GGTATGATCGTGGTTCCCACGAAATTGAAGGCACAGAGCTGCAAGCTCTT
AGTAATAGTCCCACATAGAAGCTTTCTAGACCAT
BS12133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl14-RA | 1602 | CG32476-PA | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl14-RA | 2091 | CG32476-RA | 149..1751 | 17..1619 | 8015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 248919..249344 | 743..1168 | 2130 | 100 | Plus |
| 3L | 28110227 | 3L | 248202..248621 | 133..552 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 249709..249965 | 1363..1619 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 248674..248867 | 551..744 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 249531..249650 | 1243..1362 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 248001..248116 | 17..132 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 249398..249477 | 1164..1243 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:00:52 has no hits.
BS12133.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:43 Download gff for
BS12133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 1..1602 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:36 Download gff for
BS12133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 138..1747 | 10..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:48 Download gff for
BS12133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 149..1750 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:40 Download gff for
BS12133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 145..1746 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:16 Download gff for
BS12133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 149..1750 | 17..1618 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:16 Download gff for
BS12133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 248001..248116 | 17..132 | 100 | -> | Plus |
| 3L | 248202..248621 | 133..552 | 100 | -> | Plus |
| 3L | 248676..248865 | 553..742 | 100 | -> | Plus |
| 3L | 248919..249342 | 743..1166 | 100 | -> | Plus |
| 3L | 249401..249477 | 1167..1243 | 100 | -> | Plus |
| 3L | 249532..249650 | 1244..1362 | 100 | -> | Plus |
| 3L | 249709..249964 | 1363..1618 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:48 Download gff for
BS12133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 249532..249650 | 1244..1362 | 100 | -> | Plus |
| arm_3L | 249709..249964 | 1363..1618 | 100 | | Plus |
| arm_3L | 248001..248116 | 17..132 | 100 | -> | Plus |
| arm_3L | 248202..248621 | 133..552 | 100 | -> | Plus |
| arm_3L | 248676..248865 | 553..742 | 100 | -> | Plus |
| arm_3L | 248919..249342 | 743..1166 | 100 | -> | Plus |
| arm_3L | 249401..249477 | 1167..1243 | 100 | -> | Plus |
BS12133.pep Sequence
Translation from 16 to 1617
> BS12133.pep
MNLGHWNFLLALISLQTFFNASAQISTVNNSSKGSNNSNIFHEDTFNSTS
IDVLDASIHSTLVVPQTYSTEAATISGARFATSVPVQSPVDNPLDPADCS
QREKYRKQPVATPSSRLRKCCPHGENLNIYRENQSDSMCDNGLLSFEPTI
ISAVLFDNCIEDLEVETTLDYDIGNPCNSSLLYDDKDDVFFVLQDGSLLI
IDKFGNESYTVKEHYCLDIDKSGHLFAFTCVTQVEEQIAFAKVVFVAVLM
LISMPCLLLVSYLHMTLRLLRNLHGLSLSLMSLCLASGYFVHSVVHIYGI
PNQGFIGYVIQFCILSYFFWYLCICFNVLLNVWYKLPCCIQCSKSWATFN
FACYAVFAFSGPATIVALTVQKGLPGMPSYFLQGLTESIRDSQRYFIPPV
STILFLSFLLNIISFFGFQRISGYAKAEKNIQERKCLFDQQKYEDVKKDA
KCVSLLGIIMVVSWLLEIITFYSGSNSNYLILCDMVNGLQGVWVLLIFLV
VRRRRTIILRWWYDRGSHEIEGTELQALSNSPT*
BS12133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl14-PA | 533 | CG32476-PA | 1..533 | 1..533 | 2802 | 100 | Plus |
| mth-PE | 514 | CG6936-PE | 91..509 | 117..533 | 199 | 22.7 | Plus |
| mth-PA | 514 | CG6936-PA | 91..509 | 117..533 | 199 | 22.7 | Plus |
| mth-PB | 522 | CG6936-PB | 91..478 | 117..502 | 197 | 23.2 | Plus |
| mthl10-PC | 584 | CG17061-PC | 191..528 | 188..508 | 174 | 20.7 | Plus |
