BS12134.complete Sequence
2087 bp assembled on 2009-12-07
GenBank Submission: KX805338
> BS12134.complete
GAAGTTATCAGTCGACATGACGCAGGCAACAGGTGATGCACGCATGCCAG
ACGAGGAAAGCGACCTGCTGCAGATCAAGCCACTTGGTGCTGGCCAGGAA
GTGGGACGCTCCTGCATCATGTTGGAATTTAAGGGCAAGAAGATAATGCT
GGACTGCGGAATCCATCCGGGATTGTCCGGCATGGATGCCCTGCCCTACG
TAGATCTAATAGAGGCGGATGAGATTGATCTGCTGTTTATATCACATTTC
CACTTGGATCACTGCGGTGCCTTGCCTTGGTTTCTCATGAAGACCAGCTT
TAAAGGCCGCTGCTTTATGACCCATGCCACGAAAGCCATTTACCGATGGA
TGCTGTCCGATTACATCAAGATCAGTAACATATCCACCGAACAGATGCTA
TACACGGAAGCCGATCTGGAGGCCTCCATGGAGAAGATCGAGACGATCAA
TTTCCACGAGGAGCGCGATGTGATGGGCGTACGCTTTTGTGCCTATATTG
CTGGTCATGTTTTGGGTGCCGCCATGTTCATGATCGAGATTGCTGGCATC
AAGATCTTGTATACTGGTGACTTTTCGCGCCAGGAGGATCGACATTTGAT
GGCTGCCGAAGTGCCACCGATGAAGCCGGATGTTCTTATCACAGAGTCCA
CCTACGGCACTCACATTCACGAGAAAAGAGAGGATCGAGAGAATCGATTT
ACCTCGCTGGTGCAGAAAATTGTTCAGCAAGGCGGGAGATGCTTAATTCC
AGTATTTGCTTTGGGCCGTGCCCAAGAACTGCTACTTATTCTGGATGAAT
TCTGGTCGCAGAACCCGGATCTGCACGAGATTCCCATCTACTATGCCTCC
TCTTTGGCCAAGAAGTGCATGGCTGTCTACCAGACGTACATCAATGCTAT
GAACGATCGAATTCGACGACAGATAGCTGTGAACAATCCCTTCGTTTTCC
GCCACATTTCCAACCTGAAGGGTATCGATCACTTCGAGGATATCGGACCC
TGCGTAATCATGGCGTCGCCGGGTATGATGCAGTCGGGATTGTCGCGAGA
GCTCTTCGAGAGCTGGTGCACAGATCCCAAGAACGGAGTGATTATAGCCG
GTTACTGCGTGGAGGGCACTTTGGCCAAAGCCGTTCTCTCCGAGCCGGAG
GAGATCACCACACTGTCGGGCCAGAAGCTGCCGCTCAACATGTCCGTCGA
CTACATATCGTTTTCGGCTCACACGGACTACCAGCAGACCAGTGAATTCA
TCCGCCTACTAAAGCCAACGCATGTCGTGCTCGTCCACGGCGAGCAGAAC
GAGATGTCGCGTCTGAAGTTGGCCCTGCAGCGGGAATACGAAGCAGATGC
AAGCACGGATATAAAATTCTACAACCCGCGAAACACACATGCCGTGGATC
TTTATTTCCGTGGCGAGAAAACCGCCAAGGTGATGGGAAGCCTCGCAGCC
AAGAACTCGGAGGTGGGAAGCAAACTCTCAGGTGTTCTGGTTAAGCGCGA
CTTTAAGTACCACCTCTTGGCTCCTTCTGATCTGGGCAAATACACGGATA
TGAGCATGTCTGTTGTAACCCAACGCCAGTCGATTCCCTGGGGCAGCTCG
CTGAGCACTCTAGAGCTACTGCTGGATCGCATTGGAGCCGGATGCGTTGA
GGTGCTGGAGGCGGAGCGAAAGCTGCGCGTGTTCGGCTGCATCGAGCTAA
CTGTGGAGCAGAAAATCATTGTGATGGAGTGGCAAGCGACGCATGTGAAT
GATGTGTACGCCGATGCCGTTCTTGCCTGCATCATGCAATCGGAGTTGGG
CGGAACAAATCTGAAGGGTGCCACAAAGCAAACCAAGTCAGAGGACTCGC
GCTTTCGGGAGTGCCTAATCGAGACGCTACAGGACACCTTCGGCGACAAC
TGCGTGCCAAAAATGTTCGAGGGCGATCTGCTGCCAGTGACGGTGAGCGG
TAAACGTGCGGAAATAAATCTGGAAACCCTGGCCATCAGCTGTGCCGAGG
ATGATGTGCTGCGACAAATGCTCAATACGACGGTTCAGAAGTTACACCAG
ACCCTAGTCTCCGCTCTTTGAAAGCTTTCTAGACCAT
BS12134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-RA | 2055 | CG7698-PA | 1..2055 | 17..2071 | 10275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-RA | 2190 | CG7698-RA | 97..2154 | 16..2073 | 10290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18661816..18663107 | 1538..247 | 6460 | 100 | Minus |
| 3R | 32079331 | 3R | 18661311..18661754 | 1982..1539 | 2220 | 100 | Minus |
| 3R | 32079331 | 3R | 18663170..18663331 | 246..85 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 18661157..18661249 | 2073..1981 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 18663388..18663456 | 84..16 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:56:54 has no hits.
BS12134.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:28 Download gff for
BS12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-RA | 74..2127 | 17..2070 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:59 Download gff for
BS12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 74..2127 | 17..2070 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:49 Download gff for
BS12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-RA | 74..2127 | 17..2070 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:25 Download gff for
BS12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 98..2151 | 17..2070 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:25 Download gff for
BS12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18661160..18661248 | 1982..2070 | 100 | <- | Minus |
| 3R | 18661312..18661754 | 1539..1981 | 100 | <- | Minus |
| 3R | 18661816..18663107 | 247..1538 | 100 | <- | Minus |
| 3R | 18663170..18663331 | 85..246 | 100 | <- | Minus |
| 3R | 18663388..18663455 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:59 Download gff for
BS12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14486882..14486970 | 1982..2070 | 100 | <- | Minus |
| arm_3R | 14487034..14487476 | 1539..1981 | 100 | <- | Minus |
| arm_3R | 14487538..14488829 | 247..1538 | 100 | <- | Minus |
| arm_3R | 14488892..14489053 | 85..246 | 100 | <- | Minus |
| arm_3R | 14489110..14489177 | 17..84 | 100 | | Minus |
BS12134.pep Sequence
Translation from 16 to 2070
> BS12134.pep
MTQATGDARMPDEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIH
PGLSGMDALPYVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFKGRCF
MTHATKAIYRWMLSDYIKISNISTEQMLYTEADLEASMEKIETINFHEER
DVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLMAAEVP
PMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALG
RAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIR
RQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESW
CTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFS
AHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIK
FYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHL
LAPSDLGKYTDMSMSVVTQRQSIPWGSSLSTLELLLDRIGAGCVEVLEAE
RKLRVFGCIELTVEQKIIVMEWQATHVNDVYADAVLACIMQSELGGTNLK
GATKQTKSEDSRFRECLIETLQDTFGDNCVPKMFEGDLLPVTVSGKRAEI
NLETLAISCAEDDVLRQMLNTTVQKLHQTLVSAL*
BS12134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-PA | 684 | CG7698-PA | 1..684 | 1..684 | 3540 | 100 | Plus |
| IntS11-PA | 597 | CG1972-PA | 1..440 | 10..456 | 817 | 38.8 | Plus |
| Cpsf100-PA | 756 | CG1957-PA | 2..366 | 15..370 | 301 | 24.4 | Plus |
| IntS9-PA | 654 | CG5222-PA | 9..471 | 28..422 | 205 | 20.7 | Plus |
