BS12135.complete Sequence
1118 bp assembled on 2006-11-01
GenBank Submission: FJ637082
> BS12135.complete
GAAGTTATCAGTCGACATGGTGCCCATCGGAGCCGTGCACGGCGGCCATC
CCGGCGTAGTGCATCCGCCACAGCAACCACTGCCCACGGCGCCCAGCGGC
CCAAACTCGCTGCAGCCGAACTCGGTGGGCCAGCCGGGGGCCACCACCTC
CTCGAACAGCAGCGCCTCCAACAAGAGCTCGCTATCCGTCAAGCCCAACT
ACACGCTCAAGTTCACGCTGGCCGGGCACACCAAGGCGGTGTCGGCGGTC
AAGTTCAGTCCGAATGGCGAGTGGCTGGCCAGCTCCTCCGCTGATAAACT
AATCAAAATCTGGGGAGCATACGATGGCAAGTTCGAGAAGACCATTTCGG
GCCACAAGCTGGGCATCAGCGATGTGGCCTGGAGCTCAGACTCGCGACTC
CTCGTGAGCGGCAGTGATGACAAGACGCTCAAGGTCTGGGAGCTGAGCAC
CGGGAAGAGCTTGAAAACTCTGAAGGGCCACAGCAACTATGTGTTCTGCT
GCAACTTTAATCCGCAGTCCAATCTGATCGTCTCCGGCAGCTTCGACGAG
AGCGTTCGCATATGGGATGTGCGCACCGGCAAGTGTCTGAAGACTCTACC
CGCCCATTCCGATCCCGTTTCGGCGGTACATTTCAATCGCGACGGATCGC
TGATCGTGAGCAGCAGCTACGACGGCCTCTGTCGCATATGGGACACGGCC
AGTGGACAGTGCTTGAAAACCCTGATCGACGACGACAATCCGCCCGTCAG
CTTTGTAAAGTTCTCGCCCAATGGCAAGTACATTTTGGCCGCCACGCTGG
ATAATACGCTCAAGTTGTGGGACTACTCGAAGGGCAAGTGCCTGAAGACG
TATACGGGTCACAAGAATGAGAAGTACTGCATATTCGCCAACTTCTCGGT
GACGGGAGGAAAGTGGATCGTGAGTGGCAGCGAGGACAACATGGTCTACA
TTTGGAATCTGCAGAGCAAGGAGGTGGTGCAAAAGCTGCAGGGACACACC
GATACCGTTCTGTGCACCGCCTGCCATCCCACGGAGAACATCATTGCTTC
CGCGGCGCTCGAGAACGACAAGACCATCAAGCTGTGGAAGTCGGATACAT
AGAAGCTTTCTAGACCAT
BS12135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1086 | CG17437-PB | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| wds-RA | 1086 | CG17437-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1973 | CG17437-RB | 297..1386 | 14..1103 | 5450 | 100 | Plus |
| wds-RA | 1634 | CG17437-RA | 297..1386 | 14..1103 | 5450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2586761..2587386 | 288..913 | 3130 | 100 | Plus |
| X | 23542271 | X | 2586276..2586549 | 14..287 | 1370 | 100 | Plus |
| X | 23542271 | X | 2587439..2587630 | 912..1103 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:12:45 has no hits.
BS12135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:16 Download gff for
BS12135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 1..1086 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:17 Download gff for
BS12135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 298..1395 | 10..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:56 Download gff for
BS12135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 300..1385 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:16 Download gff for
BS12135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 298..1395 | 10..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:51 Download gff for
BS12135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 300..1385 | 17..1102 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:51 Download gff for
BS12135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2587441..2587629 | 914..1102 | 100 | | Plus |
| X | 2586279..2586549 | 17..287 | 100 | -> | Plus |
| X | 2586761..2587386 | 288..913 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:56 Download gff for
BS12135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2481474..2481662 | 914..1102 | 100 | | Plus |
| arm_X | 2480312..2480582 | 17..287 | 100 | -> | Plus |
| arm_X | 2480794..2481419 | 288..913 | 100 | -> | Plus |
BS12135.pep Sequence
Translation from 16 to 1101
> BS12135.pep
MVPIGAVHGGHPGVVHPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSA
SNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWG
AYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLK
TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP
VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS
PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW
IVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALEN
DKTIKLWKSDT*
BS12135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-PB | 361 | CG17437-PB | 1..361 | 1..361 | 1929 | 100 | Plus |
| wds-PA | 361 | CG17437-PA | 1..361 | 1..361 | 1929 | 100 | Plus |
| CG10931-PA | 345 | CG10931-PA | 41..342 | 57..359 | 937 | 55.4 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 101..409 | 65..358 | 421 | 29.2 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 101..409 | 65..358 | 421 | 29.2 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 166..409 | 50..269 | 306 | 31.3 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 309..411 | 84..186 | 205 | 37.9 | Plus |
