Clone Sequence Records
BS12136.3prime Sequence
671 bp (603 high quality bases) assembled on 2006-06-16
> BS12136.3prime
ATGGTCTAGAAAGCTTTTAGTAGGAGATGCCAGTGTGGTCGCGGATCCAG
TCCAGGTAGCTGGTGACGCGGGTGAAGCCATCGGGCAGGCCCGAGGTGCA
GCCGCTGGCGGCCACAAAGGAGGTGACACCGACCAGCTTGGAGCGGTCGT
GGAGGACCAGTGGGCCGCCAGAGTCGCCGGCGCAGGTGGACTTGCCGCCG
GGGGTGGAGGTGCAGATGACGTTGTCGGTGATCACATCGGTTCCATAGAC
GCTGGAGCACTCGTCGCGGGTGATGATCTGGGAGTCCACGCAGTTCAGGT
AGTCGGAGACGCCACAGCTATCGCAAGGCCTGCCCCATCCGGAGGCTAGA
GCCCACCAGCCGGCAAAGCTGTCGTGGCGCTCGTTGCCATCGGGCAGCTC
CACCTTGTTGATCAGGTGCCAGAAGTCCACGTGCGGGGTGTTGATCAGCG
AGATGTCGTTGTTCAGGTTGTTGGTGTTGTAGTCCGAGTGCTGGCGGAAG
TGGCCGCTGCCCACGGTGTGGGTGTACTGAGCCTGGAGGCGCCACAGAGC
ACCGTAGTAGATGGTGACGGAGTGAGCTCCGTGGGTGCAGTGGGCAGCCG
TGATCACCCAGGTGTGACCGATGATCGAGCCACCGCACCACCAGCCACCG
CTGTCGCTGCTGAAACCCAGA
BS12136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8869-PA | 831 | Jon25Bii-RA | 177..831 | 671..17 | 3250 | 99.8 | Minus |
| CG2229-PA | 804 | Jon99Fii-RA | 360..438 | 470..392 | 220 | 91.1 | Minus |
| CG10475-PA | 789 | Jon65Ai-RA | 736..782 | 70..24 | 210 | 97.8 | Minus |
| CG18030-PA | 804 | Jon99Fi-RA | 391..438 | 439..392 | 190 | 95.8 | Minus |
| CG31034-PA | 798 | Jon99Cii-RA | 738..798 | 77..17 | 180 | 91.8 | Minus |
| CG31362-PA | 798 | Jon99Ciii-RA | 738..798 | 77..17 | 180 | 91.8 | Minus |
| CG2229-PA | 804 | Jon99Fii-RA | 186..224 | 644..606 | 145 | 94.8 | Minus |
| CG18030-PA | 804 | Jon99Fi-RA | 186..224 | 644..606 | 145 | 94.8 | Minus |
| CG31034-PA | 798 | Jon99Cii-RA | 180..218 | 644..606 | 145 | 94.8 | Minus |
| CG31362-PA | 798 | Jon99Ciii-RA | 180..218 | 644..606 | 145 | 94.8 | Minus |
| CG8867-PA | 801 | Jon25Bi-RA | 384..432 | 440..392 | 145 | 91.8 | Minus |
| CG8867-PB | 801 | Jon25Bi-RB | 384..432 | 440..392 | 145 | 91.8 | Minus |
| CG6298-PA | 1239 | Jon74E-RA | 1185..1218 | 77..44 | 145 | 97 | Minus |
| CG8871-PA | 777 | Jon25Biii-RA | 740..777 | 54..17 | 140 | 94.7 | Minus |
| CG18180-PA | 795 | CG18180-RA | 763..795 | 49..17 | 140 | 96.9 | Minus |
| CG7118-PA | 783 | Jon66Ci-RA | 364..405 | 433..392 | 135 | 92.8 | Minus |
| CG7170-PA | 789 | Jon66Cii-RA | 376..417 | 433..392 | 135 | 92.8 | Minus |
| CG8579-PA | 816 | Jon44E-RA | 775..806 | 58..27 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon25Bii-RB | 894 | CG8869-RB | 199..853 | 671..17 | 3260 | 99.8 | Minus |
| Jon25Bii-RA | 884 | CG8869-RA | 199..853 | 671..17 | 3260 | 99.8 | Minus |
| Jon99Cii-RA | 862 | CG31034-RA | 208..826 | 644..17 | 595 | 74.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4952284..4952938 | 17..671 | 3260 | 99.8 | Plus |
| 3R | 32079331 | 3R | 30487406..30487718 | 332..644 | 545 | 78.3 | Plus |
| 3R | 32079331 | 3R | 30489173..30489485 | 644..332 | 545 | 78.3 | Minus |
| 3R | 32079331 | 3R | 29924096..29924408 | 332..644 | 500 | 77.3 | Plus |
| 3R | 32079331 | 3R | 29922421..29922733 | 644..332 | 485 | 77 | Minus |
| 2R | 25286936 | 2R | 8691834..8692284 | 467..17 | 380 | 72.3 | Minus |
| 2L | 23513712 | 2L | 4949972..4950182 | 17..227 | 350 | 77.7 | Plus |
| 2L | 23513712 | 2L | 4954347..4954517 | 38..208 | 345 | 80.1 | Plus |
| 3R | 32079331 | 3R | 29923790..29924000 | 17..227 | 335 | 77.3 | Plus |
| 2L | 23513712 | 2L | 4954692..4954956 | 392..659 | 330 | 75.7 | Plus |
| 3R | 32079331 | 3R | 30487094..30487310 | 11..227 | 290 | 75.6 | Plus |
| 3R | 32079331 | 3R | 30489581..30489791 | 227..17 | 245 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:35:36 has no hits.
BS12136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:06 Download gff for
BS12136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8869-PA | 178..831 | 17..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:46 Download gff for
BS12136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Bii-RA | 200..862 | 8..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:30 Download gff for
BS12136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Bii-RA | 200..862 | 8..670 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:30 Download gff for
BS12136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4952275..4952937 | 8..670 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:46 Download gff for
BS12136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4952275..4952937 | 8..670 | 99 | | Plus |
BS12136.complete Sequence
863 bp assembled on 2006-11-01
GenBank Submission: FJ637083
> BS12136.complete
GAAGTTATCAGTCGACATGAAGCTGTTCCTAACTGTCCTGGCCGTGGCCA
TTGCCTGCGCCGCCGCCCAGCCTGAGAAGGTGAAGCCGGTGCCCCTAAAG
GACGCCGTCCTGGGATCCGGATCCGGCTCGATCGAGGGTCGCATTACCAA
CGGCTATCCCGCCTACGAGGGCAAGGTGCCCTACATCGTGGGTCTGGGCT
TCAGCAGCGACAGCGGTGGCTGGTGGTGCGGTGGCTCGATCATCGGTCAC
ACCTGGGTGATCACGGCTGCCCACTGCACCCACGGAGCTCACTCCGTCAC
CATCTACTACGGTGCTCTGTGGCGCCTCCAGGCTCAGTACACCCACACCG
TGGGCAGCGGCCACTTCCGCCAGCACTCGGACTACAACACCAACAACCTG
AACAACGACATCTCGCTGATCAACACCCCGCACGTGGACTTCTGGCACCT
GATCAACAAGGTGGAGCTGCCCGATGGCAACGAGCGCCACGACAGCTTTG
CCGGCTGGTGGGCTCTAGCCTCCGGATGGGGCAGGCCTTGCGATAGCTGT
GGCGTCTCCGACTACCTGAACTGCGTGGACTCCCAGATCATCACCCGCGA
CGAGTGCTCCAGCGTCTATGGAACCGATGTGATCACCGACAACGTCATCT
GCACCTCCACCCCCGGCGGCAAGTCCACCTGCGCCGGCGACTCTGGCGGC
CCACTGGTCCTCCACGACCGCTCCAAGCTGGTCGGTGTCACCTCCTTTGT
GGCCGCCAGCGGCTGCACCTCGGGCCTGCCCGATGGCTTCACCCGCGTCA
CCAGCTACCTGGACTGGATCCGCGACCACACTGGCATCTCCTACTAAAAG
CTTTCTAGACCAT
BS12136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon25Bii-RB | 831 | CG8869-PB | 1..831 | 17..847 | 4155 | 100 | Plus |
| Jon25Bii-RA | 831 | CG8869-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
| Jon99Fi-RA | 804 | CG18030-PA | 99..498 | 130..532 | 720 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon25Bii-RB | 894 | CG8869-RB | 21..853 | 15..847 | 4165 | 100 | Plus |
| Jon25Bii-RA | 884 | CG8869-RA | 21..853 | 15..847 | 4165 | 100 | Plus |
| Jon99Fi-RA | 933 | CG18030-RA | 124..523 | 130..532 | 720 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4952284..4953116 | 847..15 | 4165 | 100 | Minus |
| 3R | 32079331 | 3R | 30489086..30489485 | 130..532 | 720 | 79.2 | Plus |
| 3R | 32079331 | 3R | 29924096..29924490 | 532..135 | 695 | 78.9 | Minus |
| 3R | 32079331 | 3R | 30487406..30487805 | 532..130 | 690 | 78.7 | Minus |
| 3R | 32079331 | 3R | 29922339..29922733 | 135..532 | 665 | 78.4 | Plus |
| 2R | 25286936 | 2R | 8691569..8692284 | 123..847 | 480 | 71.7 | Plus |
| 2L | 23513712 | 2L | 4954692..4955028 | 472..130 | 460 | 77 | Minus |
| 2L | 23513712 | 2L | 4949972..4950182 | 847..637 | 350 | 77.7 | Minus |
| 3L | 28110227 | 3L | 6054102..6054321 | 346..127 | 350 | 77.3 | Minus |
| 2L | 23513712 | 2L | 4954347..4954517 | 826..656 | 345 | 80.1 | Minus |
| 3R | 32079331 | 3R | 30487094..30487310 | 853..637 | 290 | 75.6 | Minus |
| 3R | 32079331 | 3R | 29925917..29926067 | 280..130 | 260 | 78.1 | Minus |
| 3L | 28110227 | 3L | 8392871..8393046 | 837..662 | 250 | 76.1 | Minus |
| 3R | 32079331 | 3R | 30489581..30489791 | 637..847 | 245 | 74.4 | Plus |
| 3L | 28110227 | 3L | 8393335..8393537 | 346..135 | 245 | 75.5 | Minus |
| 3L | 28110227 | 3L | 6052739..6052924 | 395..580 | 240 | 75.3 | Plus |
| 3L | 28110227 | 3L | 6050882..6051030 | 131..279 | 235 | 77.2 | Plus |
| 3L | 28110227 | 3L | 6052458..6052664 | 143..346 | 235 | 75.4 | Plus |
| 3L | 28110227 | 3L | 6053626..6053681 | 849..794 | 235 | 94.6 | Minus |
| 3L | 28110227 | 3L | 6053893..6054062 | 576..407 | 235 | 75.9 | Minus |
| 3L | 28110227 | 3L | 8391653..8391732 | 130..209 | 235 | 86.2 | Plus |
| 3L | 28110227 | 3L | 9641763..9641826 | 784..847 | 200 | 87.5 | Plus |
| 3L | 28110227 | 3L | 9640033..9640096 | 785..848 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:28:11 has no hits.
BS12136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:17 Download gff for
BS12136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Bii-RA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:19 Download gff for
BS12136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Bii-RA | 10..860 | 2..856 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:02 Download gff for
BS12136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Bii-RA | 23..851 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:17 Download gff for
BS12136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Bii-RA | 10..860 | 2..856 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:41 Download gff for
BS12136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon25Bii-RA | 23..851 | 17..845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:41 Download gff for
BS12136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4952286..4953114 | 17..845 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:02 Download gff for
BS12136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4952286..4953114 | 17..845 | 100 | | Minus |
BS12136.pep Sequence
Translation from 16 to 846
> BS12136.pep
MKLFLTVLAVAIACAAAQPEKVKPVPLKDAVLGSGSGSIEGRITNGYPAY
EGKVPYIVGLGFSSDSGGWWCGGSIIGHTWVITAAHCTHGAHSVTIYYGA
LWRLQAQYTHTVGSGHFRQHSDYNTNNLNNDISLINTPHVDFWHLINKVE
LPDGNERHDSFAGWWALASGWGRPCDSCGVSDYLNCVDSQIITRDECSSV
YGTDVITDNVICTSTPGGKSTCAGDSGGPLVLHDRSKLVGVTSFVAASGC
TSGLPDGFTRVTSYLDWIRDHTGISY*
BS12136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon25Bii-PB | 276 | CG8869-PB | 1..276 | 1..276 | 1519 | 100 | Plus |
| Jon25Bii-PA | 276 | CG8869-PA | 1..276 | 1..276 | 1519 | 100 | Plus |
| Jon44E-PB | 271 | CG8579-PB | 1..271 | 1..276 | 916 | 60.6 | Plus |
| Jon44E-PA | 271 | CG8579-PA | 1..271 | 1..276 | 916 | 60.6 | Plus |
| Jon99Fii-PA | 267 | CG2229-PA | 1..267 | 1..276 | 905 | 62.4 | Plus |
