Clone Sequence Records
BS12145.complete Sequence
2024 bp assembled on 2010-07-01
GenBank Submission: KX801115
> BS12145.complete
GAAGTTATCAGTCGACATGGAGTTCGACGCCACGTACCACGAGATCTGCT
CCGCGCAGACGGTTCAGTCGGAGAGGAGGGGATTCTTCAACGAATTTTGC
GTGGACGTGCGTGATGCATGTGGCGACAAGTGGCTGCGCAACTACTTTGG
CAAACTGAAGTCCAATGCAGCCCGAGTTCTGTCCATTTTCAGCGATCGCG
AGGTGTGCGATCCTGTGCTGGGTGTCCTGGAGCATGTACAGCCGGTGTTC
AAGCAGAAGGATGCCCTCTTCTCGGCCCAGCGACGTGCACAGGCGGATAA
GCTCTACCTGATGAGCGGCAGTGGCGACGGCGAGGAGAGCAGGGAGCTGC
TGCAGCAGGCTCTAATGGCCGCCAATCTGGCCGTGATGCGGGCTCCCGAC
CGCAATGCAGATCCTGTCCTCGATGAGGGCCTCACCTTGGCATTGGCCTA
CAGATCGAGGGCTTCCATATTGATCCGCTTGGGCGAGGGGGAGGCAGCAT
TGAATGACCTCAAGCTGGCCATCAACTTTGGACTGGAGCTCAAGTCCAGT
GTGGATTACTACTTAAAGATGGCCAAAGCCTATGCAGTCATGGGAGAACC
TGCCCGCGCTGAGATCTCATTGAAGATAGCCGAGAAAATGCCTGGCTGTG
ATGCCACCCACATCGCACTGTGCCGCAAGGAACTATCATCAGTAAAGCCG
AAACCCAAGGAAGCCACCTCGGAACAGGTGCCACAACTGGCACATGGCGA
GAGTGCCGAACTAGTTGGTGCGTCCAAGGTGGTGAGGCTGGTGGAGACCA
AGGACAAGGGTCGTTTTGTGGTGGCCAACGAGGGTCTGAGAACCGGCGAC
GTTCTGCTCTTCGAGGAGCCAGTGGCCGCCTGTTTGGAGCCCAGTTACTT
TGGCACTCATTGTCATCATTGCTTCAAGAGGCTGCACACTCCCGTTTCCT
GTCTCCACTGCTCGGGAATCGCCTTCTGCTCCGCCCAGTGCATGGGCGAG
GCCTGCTCCAGTTACCATCGCTTCGAGTGCGAGTATATGGACTTGATGAT
CGGTTCTGGCATGTCCATCCTGTGCTTCATCGCGCTGCGCATCTTCACAC
AGGCGCCCAGCTTGGAGCAGGGCTTGGCCACCGCCAATCTGCTCTTCGAG
CACTTGTGCTCCCACGAGGAGGACCGCCAGCCGGACGACTACTTGCGGCG
AGCTCTGATGTCTGGCTTCCTGTTGCGCATTCTACAGAAGTCGCTGTACT
TCGGACGTCGCAAAACTGAGGGAGTGAATCCAACTGCGGTGGAGCTGCAG
GTGGCCACCGCTTTGCTGGGCCTGCTGCAGGTGCTCCAGTACAATGCCCA
CCAGATCTATCAAACCCAAGTGACCGAGGAGCATCGCTTCGACGGCAGTA
AGACGGTGTATCTGGCCGCAGGACTTTATGGTACTGGTTCCTACTTCAAT
CACGAGTGCTGGCCCAGCACCGCTTGTCATTTTGTTGGCAAGAAGCTGGT
CCTCACAGCCACCAGGCCGCATCGTGCCAATGAATTGGTGGCCGTGAACT
ACGGACCCATTTTCATCAAAAACAACTTGAAGGAGAGACAGCGATCTCTG
CGAGGACGCTACTCCTTCAGCTGCAGCTGCATGGCCTGCCAGGAGAACTG
GCCACTGCTCCAGAAACTGGACAAGCAAGTGCGATTCTGGTGCACCTCAG
CCAACTGCTCTAATTTGCTCAAGTTCCCCAAGGATTTGGCAAAGGATGTG
CGTTGTCCTCGCTGCCGCAAGAACATCTCACTCAAGGAGAGCGTAGCCAA
GATGATCAAGATCGAGGAGCTGTATCGAGAGGCTGCGCGAGCCATGGAGG
CCCAGAAAACCGTGGAGGCCATAGAACTTTTCAAGGAGTCGCTCGATATG
TTCTTCCAAGTGGCTGCACTGCCTCACAAGGACACCATAGTGGCGCAGCA
GTCGCTGCATAAGTGTTTGTCCGATACGGGAACCACATTTAAAAAGGAAG
GGAAATGAAAGCTTTCTAGACCAT
BS12145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-RA | 1992 | CG14122-PA | 1..1992 | 17..2008 | 9960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-RA | 2165 | CG14122-RA | 109..2108 | 10..2009 | 9970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12401250..12401827 | 587..10 | 2860 | 99.7 | Minus |
| 3L | 28110227 | 3L | 12400252..12400790 | 1467..929 | 2695 | 100 | Minus |
| 3L | 28110227 | 3L | 12400848..12401194 | 931..585 | 1735 | 100 | Minus |
| 3L | 28110227 | 3L | 12399596..12399916 | 2009..1689 | 1605 | 100 | Minus |
| 3L | 28110227 | 3L | 12399968..12400194 | 1692..1466 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:39:02 has no hits.
BS12145.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 11:22:05 Download gff for
BS12145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14122-RA | 97..2087 | 17..2007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:03 Download gff for
BS12145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 116..2106 | 17..2007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:17 Download gff for
BS12145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 116..2106 | 17..2007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:17 Download gff for
BS12145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12399598..12399915 | 1690..2007 | 100 | <- | Minus |
| 3L | 12399971..12400192 | 1468..1689 | 100 | <- | Minus |
| 3L | 12400252..12400788 | 931..1467 | 100 | <- | Minus |
| 3L | 12400849..12401191 | 588..930 | 100 | <- | Minus |
| 3L | 12401250..12401820 | 17..587 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:03 Download gff for
BS12145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12392698..12393015 | 1690..2007 | 100 | <- | Minus |
| arm_3L | 12393071..12393292 | 1468..1689 | 100 | <- | Minus |
| arm_3L | 12393352..12393888 | 931..1467 | 100 | <- | Minus |
| arm_3L | 12393949..12394291 | 588..930 | 100 | <- | Minus |
| arm_3L | 12394350..12394920 | 17..587 | 100 | | Minus |
BS12145.5prime Sequence
1125 bp (892 high quality bases) assembled on 2010-02-21
> BS12145.5prime
ATGGAGTTCGACGCCACGTACCACGAGATCTGCTCCGCGCAGACGGTTCA
GTCGGAGAGGAGGGGATTCTTCAACGAATTTTGCGTGGACGTGCGTGATG
CATGTGGCGACAAGTGGCTGCGCAACTACTTTGGCAAACTGAAGTCCAAT
GCAGCCCGAGTTCTGTCCATTTTCAGCGATCGCGAGGTGTGCGATCCTGT
GCTGGGTGTCCTGGAGCATGTACAGCCGGTGTTCAAGCAGAAGGATGCCC
TCTTCTCGGCCCAGCGACGTGCACAGGCGGATAAGCTCTACCTGATGAGC
GGCAGTGGCGACGGCGAGGAGAGCAGGGAGCTGCTGCAGCAGGCTCTAAT
GGCCGCCAATCTGGCCGTGATGCGGGCTCCCGACCGCAATGCAGATCCTG
TCCTCGATGAGGGCCTCACCTTGGCATTGGCCTACAGATCGAGGGCTTCC
ATATTGATCCGCTTGGGCGAGGGGGAGGCAGCATTGAATGACCTCAAGCT
GGCCATCAACTTTGGACTGGAGCTCAAGTCCAGTGTGGATTACTACTTAA
AGATGGCCAAAGCCTATGCAGTCATGGGAGAACCTGCCCGCGCTGAGATC
TCATTGAAGATAGCCGAGAAAATGCCTGGCTGTGATGCCACCCACATCGC
ACTGTGCCGCAAGGAACTATCATCAGTAAAGCCGAAACCCAAGGAAGCCA
CCTCGGAACAGGTGCCACAACTGGCACATGGCGAGAGTGCCGAACTAGTT
GGTGCGTCCAAAGTGGTGAGGCTGGTGGAGACCAAGGACAGGGGTCGTTT
TGTGGTGGCCAACGAGGGTCTGAGAACCGGCGACGTTCTGCTCTTCAAGG
AGCCAGTGGCCGCCTGTTTGGAGGCCAGTTACTTTGGACCCCTTGTCATC
ATTGCTTCCAGAAGCTGCACCCTCCCGTTTTCTGTCTCCCCTGCTCCGGA
AATCGCCTTCCTGTCCCCCCAGTGCATGGGGGAGGCCTGGTCCGTTTACC
TTCGCTTCAAGGGGAAATTTATGGGATTTTATGAATTGGTTTTGGGAGGT
CCCTCCCTGGGGCTTTCTTGGCCCTGCCCCTTCTTTCCCCCGGGGCCCCC
CCTTTGGTGAAGGGGGGTTGGGGCC
BS12145.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-RA | 2165 | CG14122-RA | 116..1123 | 1..1008 | 4680 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12401250..12401820 | 571..1 | 2855 | 100 | Minus |
| 3L | 28110227 | 3L | 12400850..12401194 | 912..569 | 1570 | 97.7 | Minus |
| 3L | 28110227 | 3L | 12400695..12400788 | 1008..914 | 230 | 85.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:26:52 has no hits.
BS12145.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:07:48 Download gff for
BS12145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14122-RA | 97..1107 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 03:30:50 Download gff for
BS12145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 116..1126 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:31:58 Download gff for
BS12145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 116..1126 | 1..1011 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:31:58 Download gff for
BS12145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12400849..12401191 | 572..913 | 97 | <- | Minus |
| 3L | 12401250..12401820 | 1..571 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 03:30:50 Download gff for
BS12145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12393949..12394291 | 572..913 | 97 | <- | Minus |
| arm_3L | 12394350..12394920 | 1..571 | 100 | | Minus |
BS12145.pep Sequence
Translation from 16 to 2007
> BS12145.pep
MEFDATYHEICSAQTVQSERRGFFNEFCVDVRDACGDKWLRNYFGKLKSN
AARVLSIFSDREVCDPVLGVLEHVQPVFKQKDALFSAQRRAQADKLYLMS
GSGDGEESRELLQQALMAANLAVMRAPDRNADPVLDEGLTLALAYRSRAS
ILIRLGEGEAALNDLKLAINFGLELKSSVDYYLKMAKAYAVMGEPARAEI
SLKIAEKMPGCDATHIALCRKELSSVKPKPKEATSEQVPQLAHGESAELV
GASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCH
HCFKRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFECEYMDLMIGSGMS
ILCFIALRIFTQAPSLEQGLATANLLFEHLCSHEEDRQPDDYLRRALMSG
FLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQT
QVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATR
PHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQK
LDKQVRFWCTSANCSNLLKFPKDLAKDVRCPRCRKNISLKESVAKMIKIE
ELYREAARAMEAQKTVEAIELFKESLDMFFQVAALPHKDTIVAQQSLHKC
LSDTGTTFKKEGK*
BS12145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-PA | 663 | CG14122-PA | 1..663 | 1..663 | 3455 | 100 | Plus |
| CG7759-PA | 660 | CG7759-PA | 2..657 | 14..658 | 557 | 25.7 | Plus |
| CG8378-PA | 573 | CG8378-PA | 171..497 | 240..547 | 258 | 26.8 | Plus |
