Clone BS12147 Report

Search the DGRC for BS12147

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCpr23B-RA
Protein status:BS12147.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12147.5prime Sequence

746 bp (709 high quality bases) assembled on 2006-06-16

> BS12147.5prime
GAAGTTATCAGTCGACATGGCAGCTAAGTTTTTCGCCCTGCTGTCTCTGG
CACTTTTGGCCACTAGCCAAGCGGAGTACAACTACAACGAGAAGGAGGCG
AAGGCGGCCAACAGTGCGTCCAGTTCTGGCGAGGATTTCCTGAGCGACTA
CCACACGCCCAGCAACAATGCTCTGAACTCGGAGGCCACGCCCGATGGCT
ATGACTACGTGGCGCCCGCCAGGAATCAGTTCACCGCCGGCAGCCGTACG
GCCAGTGTTCAGGCCTCCAATCTTCTCCAGAATGCGGCCAGTGCCGCCAA
TGCCGAATCCGTGCTGCTGCCCTCGCCGCTGCCCGTTCTCCGCCACGAGC
AGAACTCGGAGGTGGTTTCATCGACGCAGCAGCAGCAGGAGCAGCAGACA
GTTCAGCATCAGCAGTCGGAACCGTTGGTGGTCAGCTCCGTTCTGCGCCA
GCACCAGGAGCCCGAGGTCTTTCCGCCCGCCAGCTACAGCTTCAACTATG
CCGTGAACGACGCGAGCACCGGTGACATCAAGGAGCACAGCGAGACCCGG
GATGGTTATGTGGTGCGCGGATTCTACAGCCTGATCGATCCCGATGGCTA
CAAGCGCACCGTGACCTACACGGCGGATGATGTGCATGGCTTCAATGCTG
TGGTCAACCGGGTGCCCTATGCCCTTAAGGCGGTGGTTGTCCCTGTTGCC
CAGGTGGCGCAGCCCACTCCATTTGTGGCTCGCGATGAGCGCTCCA

BS12147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2973-PA 909 CG2973-RA 1..730 17..746 3650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr23B-RA 1066 CG2973-RA 64..793 17..746 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2838555..2839274 27..746 3600 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:07:47 has no hits.

BS12147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:09 Download gff for BS12147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2973-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:38 Download gff for BS12147.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr23B-RA 61..792 14..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:35 Download gff for BS12147.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr23B-RA 61..792 14..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:35 Download gff for BS12147.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2838553..2839273 23..745 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:38 Download gff for BS12147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2838553..2839273 23..745 99   Plus

BS12147.complete Sequence

941 bp assembled on 2006-11-01

GenBank Submission: FJ637084

> BS12147.complete
GAAGTTATCAGTCGACATGGCAGCTAAGTTTTTCGCCCTGCTGTCTCTGG
CACTTTTGGCCACTAGCCAAGCGGAGTACAACTACAACGAGAAGGAGGCG
AAGGCGGCCAACAGTGCGTCCAGTTCTGGCGAGGATTTCCTGAGCGACTA
CCACACGCCCAGCAACAATGCTCTGAACTCGGAGGCCACGCCCGATGGCT
ATGACTACGTGGCGCCCGCCAGGAATCAGTTCACCGCCGGCAGCCGTACG
GCCAGTGTTCAGGCCTCCAATCTTCTCCAGAATGCGGCCAGTGCCGCCAA
TGCCGAATCCGTGCTGCTGCCCTCGCCGCTGCCCGTTCTCCGCCACGAGC
AGAACTCGGAGGTGGTTTCATCGACGCAGCAGCAGCAGGAGCAGCAGACA
GTTCAGCATCAGCAGTCGGAACCGTTGGTGGTCAGCTCCGTTCTGCGCCA
GCACCAGGAGCCCGAGGTCTTTCCGCCCGCCAGCTACAGCTTCAACTATG
CCGTGAACGACGCGAGCACCGGTGACATCAAGGAGCACAGCGAGACCCGG
GATGGTTATGTGGTGCGCGGATTCTACAGCCTGATCGATCCCGATGGCTA
CAAGCGCACCGTGACCTACACGGCGGATGATGTGCATGGCTTCAATGCTG
TGGTCAACCGGGTGCCCTATGCCCTTAAGGCGGTGGTTGTCCCTGTTGCC
CAGGTGGCGCAGCCCACTCCATTTGTGGCTCGCGATGAGCGCTCCAAGTC
GGTGGATGTCATTCGATCGTCGGGAGCGGCAGCAGGTGCCTCAGAAAATG
TCCTGTCCGGTTCCGGCTCATCTTCGGGTTCCGTTTCCGGATCCGGCGTG
AGCGACACATTCGCTGAGGACAGCTACGCCAATGCTCCGCGAGGGCTGGA
CTCCTCCGGCGGTCCCTACGCCTGAAAGCTTTCTAGACCAT

BS12147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr23B-RA 909 CG2973-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr23B-RA 1066 CG2973-RA 64..972 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2838555..2839453 27..925 4495 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:02:26 has no hits.

BS12147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:18 Download gff for BS12147.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr23B-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:20 Download gff for BS12147.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr23B-RA 58..969 14..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:19 Download gff for BS12147.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr23B-RA 64..971 17..924 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:19 Download gff for BS12147.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr23B-RA 58..969 14..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:20 Download gff for BS12147.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr23B-RA 64..971 17..924 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:20 Download gff for BS12147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2838553..2839452 23..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:19 Download gff for BS12147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2838553..2839452 23..924 99   Plus

BS12147.pep Sequence

Translation from 16 to 924

> BS12147.pep
MAAKFFALLSLALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN
NALNSEATPDGYDYVAPARNQFTAGSRTASVQASNLLQNAASAANAESVL
LPSPLPVLRHEQNSEVVSSTQQQQEQQTVQHQQSEPLVVSSVLRQHQEPE
VFPPASYSFNYAVNDASTGDIKEHSETRDGYVVRGFYSLIDPDGYKRTVT
YTADDVHGFNAVVNRVPYALKAVVVPVAQVAQPTPFVARDERSKSVDVIR
SSGAAAGASENVLSGSGSSSGSVSGSGVSDTFAEDSYANAPRGLDSSGGP
YA*

BS12147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr23B-PA 302 CG2973-PA 1..302 1..302 1516 100 Plus
Cpr31A-PA 340 CG33302-PA 1..214 1..235 242 32.9 Plus
Ccp84Ae-PA 208 CG1330-PA 44..127 150..233 237 57.1 Plus
Ccp84Ab-PA 221 CG1252-PA 41..146 136..233 236 50.9 Plus
Cpr64Aa-PA 192 CG15006-PA 51..139 149..237 233 55.6 Plus