Clone Sequence Records
BS12147.5prime Sequence
746 bp (709 high quality bases) assembled on 2006-06-16
> BS12147.5prime
GAAGTTATCAGTCGACATGGCAGCTAAGTTTTTCGCCCTGCTGTCTCTGG
CACTTTTGGCCACTAGCCAAGCGGAGTACAACTACAACGAGAAGGAGGCG
AAGGCGGCCAACAGTGCGTCCAGTTCTGGCGAGGATTTCCTGAGCGACTA
CCACACGCCCAGCAACAATGCTCTGAACTCGGAGGCCACGCCCGATGGCT
ATGACTACGTGGCGCCCGCCAGGAATCAGTTCACCGCCGGCAGCCGTACG
GCCAGTGTTCAGGCCTCCAATCTTCTCCAGAATGCGGCCAGTGCCGCCAA
TGCCGAATCCGTGCTGCTGCCCTCGCCGCTGCCCGTTCTCCGCCACGAGC
AGAACTCGGAGGTGGTTTCATCGACGCAGCAGCAGCAGGAGCAGCAGACA
GTTCAGCATCAGCAGTCGGAACCGTTGGTGGTCAGCTCCGTTCTGCGCCA
GCACCAGGAGCCCGAGGTCTTTCCGCCCGCCAGCTACAGCTTCAACTATG
CCGTGAACGACGCGAGCACCGGTGACATCAAGGAGCACAGCGAGACCCGG
GATGGTTATGTGGTGCGCGGATTCTACAGCCTGATCGATCCCGATGGCTA
CAAGCGCACCGTGACCTACACGGCGGATGATGTGCATGGCTTCAATGCTG
TGGTCAACCGGGTGCCCTATGCCCTTAAGGCGGTGGTTGTCCCTGTTGCC
CAGGTGGCGCAGCCCACTCCATTTGTGGCTCGCGATGAGCGCTCCA
BS12147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2973-PA | 909 | CG2973-RA | 1..730 | 17..746 | 3650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr23B-RA | 1066 | CG2973-RA | 64..793 | 17..746 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2838555..2839274 | 27..746 | 3600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:07:47 has no hits.
BS12147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:09 Download gff for
BS12147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2973-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:38 Download gff for
BS12147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr23B-RA | 61..792 | 14..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:35 Download gff for
BS12147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr23B-RA | 61..792 | 14..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:35 Download gff for
BS12147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2838553..2839273 | 23..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:38 Download gff for
BS12147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2838553..2839273 | 23..745 | 99 | | Plus |
BS12147.complete Sequence
941 bp assembled on 2006-11-01
GenBank Submission: FJ637084
> BS12147.complete
GAAGTTATCAGTCGACATGGCAGCTAAGTTTTTCGCCCTGCTGTCTCTGG
CACTTTTGGCCACTAGCCAAGCGGAGTACAACTACAACGAGAAGGAGGCG
AAGGCGGCCAACAGTGCGTCCAGTTCTGGCGAGGATTTCCTGAGCGACTA
CCACACGCCCAGCAACAATGCTCTGAACTCGGAGGCCACGCCCGATGGCT
ATGACTACGTGGCGCCCGCCAGGAATCAGTTCACCGCCGGCAGCCGTACG
GCCAGTGTTCAGGCCTCCAATCTTCTCCAGAATGCGGCCAGTGCCGCCAA
TGCCGAATCCGTGCTGCTGCCCTCGCCGCTGCCCGTTCTCCGCCACGAGC
AGAACTCGGAGGTGGTTTCATCGACGCAGCAGCAGCAGGAGCAGCAGACA
GTTCAGCATCAGCAGTCGGAACCGTTGGTGGTCAGCTCCGTTCTGCGCCA
GCACCAGGAGCCCGAGGTCTTTCCGCCCGCCAGCTACAGCTTCAACTATG
CCGTGAACGACGCGAGCACCGGTGACATCAAGGAGCACAGCGAGACCCGG
GATGGTTATGTGGTGCGCGGATTCTACAGCCTGATCGATCCCGATGGCTA
CAAGCGCACCGTGACCTACACGGCGGATGATGTGCATGGCTTCAATGCTG
TGGTCAACCGGGTGCCCTATGCCCTTAAGGCGGTGGTTGTCCCTGTTGCC
CAGGTGGCGCAGCCCACTCCATTTGTGGCTCGCGATGAGCGCTCCAAGTC
GGTGGATGTCATTCGATCGTCGGGAGCGGCAGCAGGTGCCTCAGAAAATG
TCCTGTCCGGTTCCGGCTCATCTTCGGGTTCCGTTTCCGGATCCGGCGTG
AGCGACACATTCGCTGAGGACAGCTACGCCAATGCTCCGCGAGGGCTGGA
CTCCTCCGGCGGTCCCTACGCCTGAAAGCTTTCTAGACCAT
BS12147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr23B-RA | 909 | CG2973-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr23B-RA | 1066 | CG2973-RA | 64..972 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2838555..2839453 | 27..925 | 4495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:02:26 has no hits.
BS12147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:18 Download gff for
BS12147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr23B-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:20 Download gff for
BS12147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr23B-RA | 58..969 | 14..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:19 Download gff for
BS12147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr23B-RA | 64..971 | 17..924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:19 Download gff for
BS12147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr23B-RA | 58..969 | 14..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:20 Download gff for
BS12147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr23B-RA | 64..971 | 17..924 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:20 Download gff for
BS12147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2838553..2839452 | 23..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:19 Download gff for
BS12147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2838553..2839452 | 23..924 | 99 | | Plus |
BS12147.pep Sequence
Translation from 16 to 924
> BS12147.pep
MAAKFFALLSLALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN
NALNSEATPDGYDYVAPARNQFTAGSRTASVQASNLLQNAASAANAESVL
LPSPLPVLRHEQNSEVVSSTQQQQEQQTVQHQQSEPLVVSSVLRQHQEPE
VFPPASYSFNYAVNDASTGDIKEHSETRDGYVVRGFYSLIDPDGYKRTVT
YTADDVHGFNAVVNRVPYALKAVVVPVAQVAQPTPFVARDERSKSVDVIR
SSGAAAGASENVLSGSGSSSGSVSGSGVSDTFAEDSYANAPRGLDSSGGP
YA*
BS12147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr23B-PA | 302 | CG2973-PA | 1..302 | 1..302 | 1516 | 100 | Plus |
Cpr31A-PA | 340 | CG33302-PA | 1..214 | 1..235 | 242 | 32.9 | Plus |
Ccp84Ae-PA | 208 | CG1330-PA | 44..127 | 150..233 | 237 | 57.1 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 41..146 | 136..233 | 236 | 50.9 | Plus |
Cpr64Aa-PA | 192 | CG15006-PA | 51..139 | 149..237 | 233 | 55.6 | Plus |