Clone Sequence Records
BS12160.3prime Sequence
663 bp (663 high quality bases) assembled on 2006-06-16
> BS12160.3prime
ATGGTCTAGAAAGCTTTCAGCACACCAATCGATAGGATATGTACCGTCCC
GCCGTCTCAGAGGAACGGATGATCTTAACCACCTGGCCGCGCTTGAGTCC
AAAGTACCGGGCCACGGGATCGCCCGCCTGGATCCTCATCAACATGTTCT
CCTTCAGTTTGTAACGGCTGAGCAGCTCCTGCTTCTCCTCGACGGTCATG
ACCACGTGCTCCGGGACCAGTTCGTGCTCCGTGATGTTGATCAGCAGTTC
GGATTCGAGAAACTGTTCCAGGATGTACTTGGGGGCCATATCTACGAGCG
ATTGCTTGGCGGAGGGCGTCATGCCGCCCTGCACCACAACGATGGCCCGG
TGGATGTTCTCTTCCTGCATGCGAGTGCAGTACGTCTTGATTGTCTTGAT
GCCGATCTTCGGCTCCTCGGGAAAGAAGACGAACATCTGGTCCGTGGGAT
CGTCGTTGTGGGCCACCAAAACTATCAAATCGGAACGAGCAGGTCGCTTT
TCGCTGGGTTTGTCGCCGAACATTTCCTTGAACTGCTCCAAGGTCTGGTC
CAACTCGTCTTGGGTCACCAGGTAGCCCCGATCGTGGCTCAGCTGCATGA
TGGTCTTGCGAATGCGCCACAGCTTGTAGGTTTCCGCTTCGTCATCCATG
TCGACTGATAACT
BS12160.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11979-PA | 633 | Rpb5-RA | 1..633 | 649..17 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-RB | 1030 | CG11979-RB | 96..729 | 650..17 | 3170 | 100 | Minus |
| Rpb5-RA | 816 | CG11979-RA | 96..729 | 650..17 | 3170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10898332..10898965 | 17..650 | 3170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:24:01 has no hits.
BS12160.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:12 Download gff for
BS12160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11979-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:49 Download gff for
BS12160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 91..733 | 12..659 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:23 Download gff for
BS12160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 91..733 | 12..659 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:23 Download gff for
BS12160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10898328..10898970 | 12..659 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:49 Download gff for
BS12160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6785833..6786475 | 12..659 | 98 | | Plus |
BS12160.5prime Sequence
663 bp (663 high quality bases) assembled on 2006-06-16
> BS12160.5prime
GAAGTTATCAGTCGACATGGATGACGAAGCGGAAACCTACAAGCTGTGGC
GCATTCGCAAGACCATCATGCAGCTGAGCCACGATCGGGGCTACCTGGTG
ACCCAAGACGAGTTGGACCAGACCTTGGAGCAGTTCAAGGAAATGTTCGG
CGACAAACCCAGCGAAAAGCGACCTGCTCGTTCCGATTTGATAGTTTTGG
TGGCCCACAACGACGATCCCACGGACCAGATGTTCGTCTTCTTTCCCGAG
GAGCCGAAGATCGGCATCAAGACAATCAAGACGTACTGCACTCGCATGCA
GGAAGAGAACATCCACCGGGCCATCGTTGTGGTGCAGGGCGGCATGACGC
CCTCCGCCAAGCAATCGCTCGTAGATATGGCCCCCAAGTACATCCTGGAA
CAGTTTCTCGAATCCGAACTGCTGATCAACATCACGGAGCACGAACTGGT
CCCGGAGCACGTGGTCATGACCGTCGAGGAGAAGCAGGAGCTGCTCAGCC
GTTACAAACTGAAGGAGAACATGTTGATGAGGATCCAGGCGGGCGATCCC
GTGGCCCGGTACTTTGGACTCAAGCGCGGCCAGGTGGTTAAGATCATCCG
TTCCTCTGAGACGGCGGGACGGTACATATCCTATCGATTGGTGTGCTGAA
AGCTTTCTAGACC
BS12160.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11979-PA | 633 | Rpb5-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-RB | 1030 | CG11979-RB | 96..729 | 16..649 | 3170 | 100 | Plus |
| Rpb5-RA | 816 | CG11979-RA | 96..729 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10898332..10898965 | 649..16 | 3170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:36:24 has no hits.
BS12160.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:12 Download gff for
BS12160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11979-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:50 Download gff for
BS12160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 91..733 | 7..654 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:36 Download gff for
BS12160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 91..733 | 7..654 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:36 Download gff for
BS12160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10898328..10898970 | 7..654 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:50 Download gff for
BS12160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6785833..6786475 | 7..654 | 98 | | Minus |
BS12160.complete Sequence
665 bp assembled on 2006-11-01
GenBank Submission: FJ637085
> BS12160.complete
GAAGTTATCAGTCGACATGGATGACGAAGCGGAAACCTACAAGCTGTGGC
GCATTCGCAAGACCATCATGCAGCTGAGCCACGATCGGGGCTACCTGGTG
ACCCAAGACGAGTTGGACCAGACCTTGGAGCAGTTCAAGGAAATGTTCGG
CGACAAACCCAGCGAAAAGCGACCTGCTCGTTCCGATTTGATAGTTTTGG
TGGCCCACAACGACGATCCCACGGACCAGATGTTCGTCTTCTTTCCCGAG
GAGCCGAAGATCGGCATCAAGACAATCAAGACGTACTGCACTCGCATGCA
GGAAGAGAACATCCACCGGGCCATCGTTGTGGTGCAGGGCGGCATGACGC
CCTCCGCCAAGCAATCGCTCGTAGATATGGCCCCCAAGTACATCCTGGAA
CAGTTTCTCGAATCCGAACTGCTGATCAACATCACGGAGCACGAACTGGT
CCCGGAGCACGTGGTCATGACCGTCGAGGAGAAGCAGGAGCTGCTCAGCC
GTTACAAACTGAAGGAGAACATGTTGATGAGGATCCAGGCGGGCGATCCC
GTGGCCCGGTACTTTGGACTCAAGCGCGGCCAGGTGGTTAAGATCATCCG
TTCCTCTGAGACGGCGGGACGGTACATATCCTATCGATTGGTGTGCTGAA
AGCTTTCTAGACCAT
BS12160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-RB | 633 | CG11979-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
| Rpb5-RA | 633 | CG11979-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-RB | 1030 | CG11979-RB | 96..729 | 16..649 | 3170 | 100 | Plus |
| Rpb5-RA | 816 | CG11979-RA | 96..729 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10898332..10898965 | 649..16 | 3170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:42:23 has no hits.
BS12160.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:46 Download gff for
BS12160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:38 Download gff for
BS12160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 89..731 | 7..654 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:06 Download gff for
BS12160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 97..728 | 17..648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:46 Download gff for
BS12160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 89..731 | 7..654 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:53 Download gff for
BS12160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 97..728 | 17..648 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:53 Download gff for
BS12160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10898333..10898964 | 17..648 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:06 Download gff for
BS12160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6785838..6786469 | 17..648 | 100 | | Minus |
BS12160.pep Sequence
Translation from 16 to 648
> BS12160.pep
MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSE
KRPARSDLIVLVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIH
RAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVV
MTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETA
GRYISYRLVC*
BS12160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-PB | 210 | CG11979-PB | 1..210 | 1..210 | 1076 | 100 | Plus |
| Rpb5-PA | 210 | CG11979-PA | 1..210 | 1..210 | 1076 | 100 | Plus |
