BS12172.complete Sequence
1343 bp assembled on 2008-08-14
GenBank Submission: FJ637086
> BS12172.complete
GAAGTTATCAGTCGACATGGATTTCAAATTCCTAATGATACTCATCCTGG
GCTTTGGCTTTATGTTCGTCTTTACGGCATTCCAGACCATGTGTAACATC
GAGAAAACCATACTGGATAGCATTTCCCAGGAAGATGATACCTTCAAGGG
TGAGGGCTACACCAGCCTGGCCATTATCTACCTGTTCTTCTCGCTCTCCA
ATTGGCTGGCACCCTCGTTCATTTCGTTCACCGGACCACGAGTGGCCATG
GTCGTGGGAGCACTGACCTATACAGCCTTCATGATCACGTTCATGTTCCC
GTCGACGGTATTGCTGTACGTGGGCAGCGCAGTGCTGGGATTGGGTGCCT
CGATCACTTGGACGGGACAGGGAACGTATCTGGCGCGCTGCAGTGAATCT
TCCACGATTTCCCGTAACTCTGGCGTCTTCTGGGCCCTGCTGCAGTGCAG
CATGTTCATTGGGAATCTGTTCGTGTACTATCAGTTCCAGGACAAGACCC
GCATCGACAAGGAGACACGGAATCTGGTCATCGGCGTGCTCACGGTAATT
GCTGTGCTGGGCATCGTGTTTCTGGCCGCACTGAGATTCATGGCCGATAA
TGCCGAGCACGACAACGAGCTGGAACAGAAGCACACGGGCTGTGGACAGG
CCATATACGCATTGAAGTCCGCAGGACAATTGTTCCTCACCAAAAAGATG
CTGCTCCTTAGTCTGGCCTTCTTTTACACAGGCCTGGAGCTGTCATTCTT
TAGCGGAGTTTTTGGATCAGCGATTGGATTCACCACGAAAATAGCCGAAA
CACCGAAGGAGATCGTTGGACTGGTGGGCATTTGCATTGGAGCCGGCGAG
GTCTTTGGAGGAGGACTATTCGGCATACTGGGCAACAAGACGACGAGATA
TGGACGCGATCCCATCGTGATTGCCGGCTATGTGATGCACATGGCAGCCT
TCTTCATGACGTTCATCAACCTGCCGAACAGTGCACCGTTTAAAGATACC
ACCGATATATCCTATCTGGACCCGCCCCGAGCCAGCATCGCCTTGGTGTG
TGCCTTCCTTTTGGGCCTGGGCGATGCCTGTTTCAACACTCAGATCTACT
CCATGCTTGGCGGGGAGTATGTGAACAATGCCGTGGGAGCCTTTGCCCTG
TTCAAGTTCACCCAGTCGGTGGCGGCGGCCATTAGCTTCTTCTACTCCTC
GCACTTCGGGCTGTACGTGCAGCTGGGCATCCTGGTGGTTATGGGAACCA
TTGGCACCATTGCCTTCGTCTTCGTAGAGTGGGGCTTCAAGCGGCAGCAC
CGCGAGCAGGAGGCGTTGGAGAAGTAAAAGCTTTCTAGACCAT
BS12172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18549-RA | 1311 | CG18549-PA | 1..1311 | 17..1327 | 6555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18549-RA | 2004 | CG18549-RA | 344..1654 | 17..1327 | 6555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12455408..12456005 | 730..1327 | 2990 | 100 | Plus |
| 3R | 32079331 | 3R | 12454885..12455343 | 274..732 | 2295 | 100 | Plus |
| 3R | 32079331 | 3R | 12454642..12454813 | 102..273 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 12449639..12449725 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:42:05 has no hits.
BS12172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:26 Download gff for
BS12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 337..1661 | 9..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:45 Download gff for
BS12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 344..1652 | 17..1325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:44 Download gff for
BS12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 344..1652 | 17..1325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:00 Download gff for
BS12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 344..1652 | 17..1325 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:00 Download gff for
BS12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12449639..12449725 | 17..103 | 100 | -> | Plus |
| 3R | 12454644..12454813 | 104..273 | 100 | -> | Plus |
| 3R | 12454885..12455342 | 274..731 | 100 | -> | Plus |
| 3R | 12455410..12456003 | 732..1325 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:45 Download gff for
BS12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8275361..8275447 | 17..103 | 100 | -> | Plus |
| arm_3R | 8280366..8280535 | 104..273 | 100 | -> | Plus |
| arm_3R | 8280607..8281064 | 274..731 | 100 | -> | Plus |
| arm_3R | 8281132..8281725 | 732..1325 | 100 | | Plus |
BS12172.pep Sequence
Translation from 16 to 1326
> BS12172.pep
MDFKFLMILILGFGFMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTS
LAIIYLFFSLSNWLAPSFISFTGPRVAMVVGALTYTAFMITFMFPSTVLL
YVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQCSMFIGN
LFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDN
ELEQKHTGCGQAIYALKSAGQLFLTKKMLLLSLAFFYTGLELSFFSGVFG
SAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTRYGRDPI
VIAGYVMHMAAFFMTFINLPNSAPFKDTTDISYLDPPRASIALVCAFLLG
LGDACFNTQIYSMLGGEYVNNAVGAFALFKFTQSVAAAISFFYSSHFGLY
VQLGILVVMGTIGTIAFVFVEWGFKRQHREQEALEK*
BS12172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18549-PA | 436 | CG18549-PA | 1..436 | 1..436 | 2235 | 100 | Plus |
| CG4928-PB | 538 | CG4928-PB | 46..490 | 8..436 | 213 | 22.9 | Plus |
| CG4928-PA | 538 | CG4928-PA | 46..490 | 8..436 | 213 | 22.9 | Plus |
