Clone Sequence Records
BS12173.3prime Sequence
609 bp (609 high quality bases) assembled on 2006-06-16
> BS12173.3prime
ATGGTCTAGAAAGCTTCTACATCAGGCAGCACTTCCTCTTGCCCTTCTTC
TTGTAATCCTGCTCGATGAAGGGACGCTCGGCGATCTGGAACTTGCGCAC
GATCCTCACGAGCTCGTGGAAGGCCTGATCGACGTTGACCCTCAGTTTGG
CACTGCACTCGATGTAGGGGATCATCAGGTTGCGGCTGGTGTTCTGCGCC
TCCTCCAGGGACACCTGCTGCTGGTGCTTCAGGTCGCACTTGTTACCCAC
CATCAGCATGGGGAACTCGTCGCGATCCTTGACGCGCAGTATCTGGCGCT
GGAACTTGGGGATCTCATCGAAGCTGGAATGATCGTTGAGCGCGAAGACG
AGCAGGAATCCCTCGCCGGAGCGCATGTACTGCTCCCGCATGGCACTGAA
CTCCTCCTGGCCAGCCGTGTCCAAAATGTCCAATTTGGCTGGCACATCGT
CGATGTTGCACTGCTTCGTGTACGAGTCTTCAATGGTGGGATCGTAGTCC
GTGACGAAGTAGCTCTGGATGAACTGTATCGTTATCGCTGACTTGCCCAC
GCCGCCGCCGCCGACGACCACCAGTTTGTACGTTTGCATCTGCATGTCGA
CTGATAACT
BS12173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1167-PA | 579 | Ras64B-RA | 1..579 | 595..17 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-RA | 1620 | CG1167-RA | 104..685 | 595..14 | 2910 | 100 | Minus |
Ras85D-RA | 1958 | CG9375-RA | 451..696 | 580..335 | 285 | 76.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4140051..4140463 | 426..14 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 4139904..4139994 | 517..427 | 455 | 100 | Minus |
3L | 28110227 | 3L | 4139179..4139259 | 595..515 | 405 | 100 | Minus |
3R | 32079331 | 3R | 9511881..9511978 | 335..432 | 220 | 81.6 | Plus |
3R | 32079331 | 3R | 9512172..9512282 | 470..580 | 180 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:04:38 has no hits.
BS12173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:16 Download gff for
BS12173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1167-PA | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:15 Download gff for
BS12173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 101..691 | 7..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:23 Download gff for
BS12173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 101..691 | 7..598 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:23 Download gff for
BS12173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4139176..4139259 | 515..598 | 98 | -> | Minus |
3L | 4139907..4139994 | 427..514 | 100 | -> | Minus |
3L | 4140051..4140469 | 7..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:15 Download gff for
BS12173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4139176..4139259 | 515..598 | 98 | -> | Minus |
arm_3L | 4139907..4139994 | 427..514 | 100 | -> | Minus |
arm_3L | 4140051..4140469 | 7..426 | 99 | | Minus |
BS12173.5prime Sequence
609 bp (609 high quality bases) assembled on 2006-06-16
> BS12173.5prime
GAAGTTATCAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCG
GCGGCGGCGGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGC
TACTTCGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCA
GTGCAACATCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTG
GCCAGGAGGAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAG
GGATTCCTGCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGAT
CCCCAAGTTCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCC
CCATGCTGATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTG
TCCCTGGAGGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACAT
CGAGTGCAGTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGC
TCGTGAGGATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAG
CAGGATTACAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGTAGAAGCT
TTCTAGACC
BS12173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1167-PA | 579 | Ras64B-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-RA | 1620 | CG1167-RA | 104..685 | 17..598 | 2910 | 100 | Plus |
Ras85D-RA | 1958 | CG9375-RA | 451..696 | 32..277 | 285 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4140051..4140463 | 186..598 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 4139904..4139994 | 95..185 | 455 | 100 | Plus |
3L | 28110227 | 3L | 4139179..4139259 | 17..97 | 405 | 100 | Plus |
3R | 32079331 | 3R | 9511881..9511978 | 277..180 | 220 | 81.6 | Minus |
3R | 32079331 | 3R | 9512172..9512282 | 142..32 | 180 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:43:15 has no hits.
BS12173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:17 Download gff for
BS12173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1167-PA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:17 Download gff for
BS12173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 101..691 | 14..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:17 Download gff for
BS12173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 101..691 | 14..605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:17 Download gff for
BS12173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4139176..4139259 | 14..97 | 98 | -> | Plus |
3L | 4139907..4139994 | 98..185 | 100 | -> | Plus |
3L | 4140051..4140469 | 186..605 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:17 Download gff for
BS12173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4139176..4139259 | 14..97 | 98 | -> | Plus |
arm_3L | 4139907..4139994 | 98..185 | 100 | -> | Plus |
arm_3L | 4140051..4140469 | 186..605 | 99 | | Plus |
BS12173.complete Sequence
611 bp assembled on 2006-11-01
GenBank Submission: FJ637087
> BS12173.complete
GAAGTTATCAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCG
GCGGCGGCGGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGC
TACTTCGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCA
GTGCAACATCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTG
GCCAGGAGGAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAG
GGATTCCTGCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGAT
CCCCAAGTTCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCC
CCATGCTGATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTG
TCCCTGGAGGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACAT
CGAGTGCAGTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGC
TCGTGAGGATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAG
CAGGATTACAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGTAGAAGCT
TTCTAGACCAT
BS12173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-RA | 579 | CG1167-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Ras85D-RA | 570 | CG9375-PA | 10..255 | 32..277 | 255 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-RA | 1620 | CG1167-RA | 104..685 | 17..598 | 2910 | 100 | Plus |
Ras85D-RA | 1958 | CG9375-RA | 451..696 | 32..277 | 255 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4140051..4140463 | 186..598 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 4139904..4139994 | 95..185 | 455 | 100 | Plus |
3L | 28110227 | 3L | 4139179..4139259 | 17..97 | 405 | 100 | Plus |
3R | 32079331 | 3R | 9511881..9511978 | 277..180 | 220 | 81.6 | Minus |
3R | 32079331 | 3R | 9512172..9512282 | 142..32 | 180 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:05:54 has no hits.
BS12173.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:20 Download gff for
BS12173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:03 Download gff for
BS12173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 99..689 | 14..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:06 Download gff for
BS12173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 104..682 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:20 Download gff for
BS12173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 99..689 | 14..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:39 Download gff for
BS12173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 104..682 | 17..595 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:39 Download gff for
BS12173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4139179..4139259 | 17..97 | 100 | -> | Plus |
3L | 4139907..4139994 | 98..185 | 100 | -> | Plus |
3L | 4140051..4140460 | 186..595 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:06 Download gff for
BS12173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4139179..4139259 | 17..97 | 100 | -> | Plus |
arm_3L | 4139907..4139994 | 98..185 | 100 | -> | Plus |
arm_3L | 4140051..4140460 | 186..595 | 100 | | Plus |
BS12173.pep Sequence
Translation from 16 to 594
> BS12173.pep
MQMQTYKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIEDSYTKQCNIDD
VPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQR
QILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAK
LRVNVDQAFHELVRIVRKFQIAERPFIEQDYKKKGKRKCCLM*
BS12173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-PA | 192 | CG1167-PA | 1..192 | 1..192 | 996 | 100 | Plus |
Ras85D-PA | 189 | CG9375-PA | 1..165 | 3..168 | 513 | 62.7 | Plus |
R-PC | 184 | CG1956-PC | 1..184 | 3..192 | 464 | 47.9 | Plus |
R-PB | 184 | CG1956-PB | 1..184 | 3..192 | 464 | 47.9 | Plus |
R-PA | 184 | CG1956-PA | 1..184 | 3..192 | 464 | 47.9 | Plus |