Clone BS12173 Report

Search the DGRC for BS12173

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptRas64B-RA
Protein status:BS12173.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12173.3prime Sequence

609 bp (609 high quality bases) assembled on 2006-06-16

> BS12173.3prime
ATGGTCTAGAAAGCTTCTACATCAGGCAGCACTTCCTCTTGCCCTTCTTC
TTGTAATCCTGCTCGATGAAGGGACGCTCGGCGATCTGGAACTTGCGCAC
GATCCTCACGAGCTCGTGGAAGGCCTGATCGACGTTGACCCTCAGTTTGG
CACTGCACTCGATGTAGGGGATCATCAGGTTGCGGCTGGTGTTCTGCGCC
TCCTCCAGGGACACCTGCTGCTGGTGCTTCAGGTCGCACTTGTTACCCAC
CATCAGCATGGGGAACTCGTCGCGATCCTTGACGCGCAGTATCTGGCGCT
GGAACTTGGGGATCTCATCGAAGCTGGAATGATCGTTGAGCGCGAAGACG
AGCAGGAATCCCTCGCCGGAGCGCATGTACTGCTCCCGCATGGCACTGAA
CTCCTCCTGGCCAGCCGTGTCCAAAATGTCCAATTTGGCTGGCACATCGT
CGATGTTGCACTGCTTCGTGTACGAGTCTTCAATGGTGGGATCGTAGTCC
GTGACGAAGTAGCTCTGGATGAACTGTATCGTTATCGCTGACTTGCCCAC
GCCGCCGCCGCCGACGACCACCAGTTTGTACGTTTGCATCTGCATGTCGA
CTGATAACT

BS12173.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1167-PA 579 Ras64B-RA 1..579 595..17 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-RA 1620 CG1167-RA 104..685 595..14 2910 100 Minus
Ras85D-RA 1958 CG9375-RA 451..696 580..335 285 76.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4140051..4140463 426..14 2065 100 Minus
3L 28110227 3L 4139904..4139994 517..427 455 100 Minus
3L 28110227 3L 4139179..4139259 595..515 405 100 Minus
3R 32079331 3R 9511881..9511978 335..432 220 81.6 Plus
3R 32079331 3R 9512172..9512282 470..580 180 77.5 Plus
Blast to na_te.dros performed on 2015-02-10 16:04:38 has no hits.

BS12173.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:16 Download gff for BS12173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1167-PA 1..579 17..595 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:15 Download gff for BS12173.3prime
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 101..691 7..598 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:23 Download gff for BS12173.3prime
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 101..691 7..598 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:23 Download gff for BS12173.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4139176..4139259 515..598 98 -> Minus
3L 4139907..4139994 427..514 100 -> Minus
3L 4140051..4140469 7..426 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:15 Download gff for BS12173.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4139176..4139259 515..598 98 -> Minus
arm_3L 4139907..4139994 427..514 100 -> Minus
arm_3L 4140051..4140469 7..426 99   Minus

BS12173.5prime Sequence

609 bp (609 high quality bases) assembled on 2006-06-16

> BS12173.5prime
GAAGTTATCAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCG
GCGGCGGCGGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGC
TACTTCGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCA
GTGCAACATCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTG
GCCAGGAGGAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAG
GGATTCCTGCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGAT
CCCCAAGTTCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCC
CCATGCTGATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTG
TCCCTGGAGGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACAT
CGAGTGCAGTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGC
TCGTGAGGATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAG
CAGGATTACAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGTAGAAGCT
TTCTAGACC

BS12173.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1167-PA 579 Ras64B-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-RA 1620 CG1167-RA 104..685 17..598 2910 100 Plus
Ras85D-RA 1958 CG9375-RA 451..696 32..277 285 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4140051..4140463 186..598 2065 100 Plus
3L 28110227 3L 4139904..4139994 95..185 455 100 Plus
3L 28110227 3L 4139179..4139259 17..97 405 100 Plus
3R 32079331 3R 9511881..9511978 277..180 220 81.6 Minus
3R 32079331 3R 9512172..9512282 142..32 180 77.5 Minus
Blast to na_te.dros performed on 2015-02-10 16:43:15 has no hits.

BS12173.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:17 Download gff for BS12173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1167-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:17 Download gff for BS12173.5prime
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 101..691 14..605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:17 Download gff for BS12173.5prime
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 101..691 14..605 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:17 Download gff for BS12173.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4139176..4139259 14..97 98 -> Plus
3L 4139907..4139994 98..185 100 -> Plus
3L 4140051..4140469 186..605 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:17 Download gff for BS12173.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4139176..4139259 14..97 98 -> Plus
arm_3L 4139907..4139994 98..185 100 -> Plus
arm_3L 4140051..4140469 186..605 99   Plus

BS12173.complete Sequence

611 bp assembled on 2006-11-01

GenBank Submission: FJ637087

> BS12173.complete
GAAGTTATCAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCG
GCGGCGGCGGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGC
TACTTCGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCA
GTGCAACATCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTG
GCCAGGAGGAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAG
GGATTCCTGCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGAT
CCCCAAGTTCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCC
CCATGCTGATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTG
TCCCTGGAGGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACAT
CGAGTGCAGTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGC
TCGTGAGGATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAG
CAGGATTACAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGTAGAAGCT
TTCTAGACCAT

BS12173.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-RA 579 CG1167-PA 1..579 17..595 2895 100 Plus
Ras85D-RA 570 CG9375-PA 10..255 32..277 255 73.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-RA 1620 CG1167-RA 104..685 17..598 2910 100 Plus
Ras85D-RA 1958 CG9375-RA 451..696 32..277 255 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4140051..4140463 186..598 2065 100 Plus
3L 28110227 3L 4139904..4139994 95..185 455 100 Plus
3L 28110227 3L 4139179..4139259 17..97 405 100 Plus
3R 32079331 3R 9511881..9511978 277..180 220 81.6 Minus
3R 32079331 3R 9512172..9512282 142..32 180 77.5 Minus
Blast to na_te.dros performed on 2014-11-27 17:05:54 has no hits.

BS12173.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:20 Download gff for BS12173.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:03 Download gff for BS12173.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 99..689 14..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:06 Download gff for BS12173.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 104..682 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:20 Download gff for BS12173.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 99..689 14..605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:39 Download gff for BS12173.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 104..682 17..595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:39 Download gff for BS12173.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4139179..4139259 17..97 100 -> Plus
3L 4139907..4139994 98..185 100 -> Plus
3L 4140051..4140460 186..595 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:06 Download gff for BS12173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4139179..4139259 17..97 100 -> Plus
arm_3L 4139907..4139994 98..185 100 -> Plus
arm_3L 4140051..4140460 186..595 100   Plus

BS12173.pep Sequence

Translation from 16 to 594

> BS12173.pep
MQMQTYKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIEDSYTKQCNIDD
VPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQR
QILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAK
LRVNVDQAFHELVRIVRKFQIAERPFIEQDYKKKGKRKCCLM*

BS12173.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-PA 192 CG1167-PA 1..192 1..192 996 100 Plus
Ras85D-PA 189 CG9375-PA 1..165 3..168 513 62.7 Plus
R-PC 184 CG1956-PC 1..184 3..192 464 47.9 Plus
R-PB 184 CG1956-PB 1..184 3..192 464 47.9 Plus
R-PA 184 CG1956-PA 1..184 3..192 464 47.9 Plus