Clone Sequence Records
BS12174.complete Sequence
3188 bp assembled on 2010-05-13
GenBank Submission: KX802965
> BS12174.complete
GAAGTTATCAGTCGACATGTCAAAAAATGCGGGGCGAACCAGCAGCAAAA
ACGTCAAAACGGAAGTGCCAAGGAAGGTCACTAAATCACCAGCAACAAGT
GGACCGGCCACCACAAGGGAATCGAAGGAGCGGAGGTCACTGGCCAAACA
ACCGGATAGCTTGGAAGGTGAAAAAATTGCGAGGAAAACCACAACAGCAG
CGCAACCTACGACCGCCAGCAAAAAGCCATTAGCCACGGGGAAAAACAAG
GAAAGGGAGTCCTTGAGCAAGAGGACCACTCCGTCCCCAGGTGCATTGCG
TGCCACCACCAGACACACAACCACGACCACAAACCCACCCCTGCAGTCCA
AGACCACCAAGACCACGAAGCTCGTGGCCAAATCGAAGCCCAATGCAGTT
CTGGACACGTATCACAGTGTTACGGTCGCCTCGCCACCGCAAAAGCGCAG
AGGACAGGCGGAGCAGGAGAAGGAATCGCCCACGCCTTCATCAAAAGAAT
ATTCCCCTGTTGCACAGACTCAAAAGGAGCACAAGCCACAGTCTCCTTCC
AAGGGAGATGCTCGTATTGTTCCGGCAAGATCCAGAACTTATACACGCAC
CTTGGATCCCGAGGAAGTGGTTATCCTTAAGCGTGAATCCGCCAAGCAAA
GAAGCGAAGTGGAGGCCAAGGAATCAGAGCCTGTGAAACAGCCAGTGGCC
TTTGAAGTCAAATTCGATGAAGCCAAAAAGCCAGAACCGGAATCCGATCA
CTACTCCGATGACTTCGAATCCTATGAATCGGATTTCGAAACCGATGCCA
GCACGCCCGACGAGGTGGAATCCGATGAAGCGCAGGAGCCCTCATCCTCC
GAGGCGGAAGTGGAGGAGGAGCGGGAGGAAGAGGATTCGGAGCCCACCCA
AAATCCCATCACTGTGATCCAACGCGACAAGGATCAAGAGCGGAAATTGG
ACTCCGGTCATTATGACATGCATTTGCGCAGGAATCCCTTGAGCAGTCTG
TCCACGCAGAATCAGTATGATAGCTTTGATACCAACTCGATGGCCAACTC
AGAGCAACTGGACTCGGGCATTAGCACCACTGGCGTGGAGAAGCCCCGGA
GTGGAGAGGCTAACGTGTACTATGGTGGCTACTCGGGATTCGTTTCCCAT
CCCGTGATCAGTCGTCGCGGCGAAGAGCTAATGGCCAAATTGCGTTTCGA
TCAACTGAACTACCACCTGTTCGAGATGAAGCCCCTCAGCTACGAGGGAT
TCATGCAGAGCTATGGGAAGCTGAATGCCAGTCAAGTGGCCACACAGACG
CAGTCACCACACATGGACGGCGAGTGCCAGACGCTGGAGGTGCACAGTCG
TAGCAGCTGGACCCAACATCCACCCCACTATGGTGGGCAATTCGTTCTCA
GCTGCAGTGTCGATGCGGAGTTGGATGAAACATGGAGCAAGCAACCTGCA
GATGAATACGAAGCTAGCATTTCTCGATTGGAGCAACTGCATCGCCTGGA
GCAGGCACGCTCCCAGCAACTGCAGCAAAAGAGATTGGCCAAGAGCACGG
ATCTGGAGCGACTGAATTCGTTTCTTCACAGGGCCGGCAGACTTATGGGA
CTGGTTTTGGAGGGCAAAACCACGGCCCACGGCCAGGGGAATAGTCCTCG
AAATGTACCACTTCAGACGGGACTGCTGAACGCACTGCCTGTGCGTCGAA
TCTTTGGAAGTGCCGGAAATGGACAACTGGTGGTCACCGTGCACGAGTGT
CCTGCGGACAGCAATGTATATAAGGAGGACTTTGCCAGCCTTCTGATGGT
GTGGTCACTGGCCAATCCCAGCCAGCCGTTGCGCCTGCTCTCCACCTGGG
CGGAAGTCAGCCGTGTGGCACTATCTGCGCAGGCCCAGGATATCGTGGTG
GCCGGACTGAGAGATGGTAGTGTGGCTATGTGGGATTTGCGCGAGACGCA
CAGCTACTGCTCCAAGTTGGATGGCCACCTAACCCATTTTGCAGCCACAC
AATCGGTGGTTCCCATGCCGGAGCAACAGGACAAGGAGGTAAATGCCATG
GATCTGGGCGCTGTGGTGGATGTGCGCAGCTTTAGATCACACTTGAATGC
TGGAGGAGTAGCTGCGACTAGTGGTTTGCAGACGACGTACAAGGAAGTTC
AGTACGCCTCGCTGAATGACTCCGGCCTGCTGACCATGTGGACCCTGGTG
GAGGGCGCCTCGTCCACCAACAGCAACGAGTTCAGTTCGCCGTGGGCGCG
TGTGAAGCTACTGCAGAGTGGCAGCTGTGATCTGAGGAGCTATCTGGAGC
GACGCCTCCTGAAGAGCCATCAGAGTGCGTACGAGAAGACCAAGTCCCTG
TTCCAGGGCAACATCTACAGCGATGATGTGCTGCGTGAGCTGAATGACAC
GCAAACGCTGACCACGGCACTCCAGGGACAGGGATTGCAGGGCCTGCGCT
TCACCAGCATCGATACGGGCAGTGAGCTCATCTATGTGTGCACCAACCGA
AACTTTGTGCTCTGCTGCACGCGTAGTTTGAAGACGGAACGCTTCGCGAG
GATCGCCGTGAACGAAAGTCGTTTCCTGTTTCCCACCTCGTTGTGTGTGC
TCTCCAATGAGAACTATGTGGCCGTGGGTCTGTCCAATGGATCTGTGATG
ATACTCAACTGCAATCAGCGACAGAGGCAGCGCCAGAGGAATCAGCAGAG
ACCCAAAACAGGACTTCCGCCGGCCACGGATGAGCCCGATCCCGAGACGG
GCAAATCGTGTGCCATTCAAAACATCATACTCAACGAGCGTAGATCATTT
GACCAGCAGATGGATGACAATCCCACGTACGATGCCCGACCCAACACAGC
TCTGGAGCTGATTGAGCGACCCAGGCGTTCCTACGAAATGAGGGTCTTTG
ACCAGCAGCTGCTCCTAAGTGGCAGCGGTCTGCGCCAGCATCTCGTCCAG
GCCCTGATCCTCTCCAGCGACGGCTGGCAGCTTTCCGCCCTCACCAATGG
CACTGTGCGTCACTACGATTTCTATCGCGACAGAGAGTTACCCGTGGAGG
AGCTCATGGACACACGCCTCAAGGTGACGGACATTGCCGGTGCTCGAAGT
TGTGGACAGGAACAGGTTCTGCTCATCCTGGACTCGACTGGAAAGGTGCA
GTCGCGCACTCTGGACTACTAGAAGCTTTCTAGACCAT
BS12174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15701-RA | 3156 | CG15701-PA | 1..3156 | 17..3172 | 15780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15701-RA | 3367 | CG15701-RA | 111..3266 | 17..3172 | 15780 | 100 | Plus |
| CG15706-RF | 2419 | CG15706-RF | 58..95 | 54..17 | 190 | 100 | Minus |
| CG15706-RD | 2578 | CG15706-RD | 336..373 | 54..17 | 190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16230778..16232877 | 53..2152 | 10500 | 100 | Plus |
| 2R | 25286936 | 2R | 16232964..16233986 | 2150..3172 | 5115 | 100 | Plus |
| 2R | 25286936 | 2R | 16230308..16230345 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 750..816 | 891..955 | 132 | 68.7 | Plus |
BS12174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:12 Download gff for
BS12174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15701-RA | 92..3247 | 17..3172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:33 Download gff for
BS12174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15701-RA | 111..3266 | 17..3172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:50 Download gff for
BS12174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15701-RA | 111..3266 | 17..3172 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:50 Download gff for
BS12174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16230308..16230343 | 17..52 | 100 | -> | Plus |
| 2R | 16230778..16232877 | 53..2152 | 100 | -> | Plus |
| 2R | 16232967..16233986 | 2153..3172 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:33 Download gff for
BS12174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12117813..12117848 | 17..52 | 100 | -> | Plus |
| arm_2R | 12118283..12120382 | 53..2152 | 100 | -> | Plus |
| arm_2R | 12120472..12121491 | 2153..3172 | 100 | | Plus |
BS12174.5prime Sequence
1173 bp (868 high quality bases) assembled on 2010-02-21
> BS12174.5prime
ATGTCAAAAAATGCGGGGCGAACCAGCAGCAAAAACGTCAAAACGGAAGT
GCCAAGGAAGGTCACTAAATCACCAGCAACAAGTGGACCGGCCACCACAA
GGGAATCGAAGGAGCGGAGGTCACTGGCCAAACAACCGGATAGCTTGGAA
GGTGAAAAAATTGCGAGGAAAACCACAACAGCAGCGCAACCTACGACCGC
CAGCAAAAAGCCATTAGCCACGGGGAAAAACAAGGAAAGGGAGTCCTTGA
GCAAGAGGACCACTCCGTCCCCAGGTGCATTGCGTGCCACCACCAGACAC
ACAACCACGACCACAAACCCACCCCTGCAGTCCAAGACCACCAAGACCAC
GAAGCTCGTGGCCAAATCGAAGCCCAATGCAGTTCTGGACACGTATCACA
GTGTTACGGTCGCCTCGCCACCGCAAAAGCGCAGAGGACAGGCGGAGCAG
GAGAAGGAATCGCCCACGCCTTCATCAAAAGAATATTCCCCTGTTGCACA
GACTCAAAAGGAGCACAAGCCACAGTCTCCTTCCAAGGGAGATGCTCGTA
TTGTTCCGGCAAGATCCAGAACTTATACACGCACCTTGGATCCCGAGGAA
GTGGTTATCCTTAAGCGTGAATCCGCCAAGCAAAGAAGCGAAGTGGAGGC
CAAGGAATCAGAGCCTGTGAAACAGCCAGTGGCCTTTGAAGTCAAATTCG
ATGAAGCCAAAAAGCCAGAACCGGAATCCGATCACTACTCCGATGACTTC
GAATCCTATGAATCGGATTTCGAAACCGATGCCAGCACGCCCCGACGAGG
TGGAATCCCATGAAGCGCACGAGCCCTCATCCTCCGAAGCGGAAGTGAAG
GAGGAACGGGGGAAAAGGAACCGGAGCCCACCCAAATCCCCATCATTGTG
ATCCAACGCGACAAGGAACAAAAGCGGAATTGGAACTCCGGGCATTATGA
AATGCATTTGCGAAGGAATCCCTTGAACAGTCTGTCCACGCCAAAATCAA
ATGAAAGCTTTTAATACCAACTTCAATGGCCCAATTCAAAACAAAGGGAC
TCCGGGCATTTTACCCCCCTGGGGGGGGAAAAAACCCCCCGGAAAGGGAA
AAGGGTTAAAGGGTGAATAAGGGGGGGCTTATTCCGGGAATTCTTTTTTC
CCCACCCCCCGGGGTTTCATATC
BS12174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 22:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15701-RA | 3367 | CG15701-RA | 111..1166 | 1..1060 | 4660 | 96.5 | Plus |
| CG15706-RF | 2419 | CG15706-RF | 58..95 | 38..1 | 190 | 100 | Minus |
| CG15706-RD | 2578 | CG15706-RD | 336..373 | 38..1 | 190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 22:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16230778..16231732 | 37..991 | 4380 | 97.7 | Plus |
| 2R | 25286936 | 2R | 16230308..16230345 | 1..38 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-29 22:49:27 has no hits.
BS12174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:08:02 Download gff for
BS12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15701-RA | 92..1102 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:14:51 Download gff for
BS12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15701-RA | 111..1121 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:02:47 Download gff for
BS12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15701-RA | 111..1121 | 1..1011 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 01:02:47 Download gff for
BS12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16230308..16230343 | 1..36 | 100 | -> | Plus |
| 2R | 16230778..16231733 | 37..992 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:14:51 Download gff for
BS12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12117813..12117848 | 1..36 | 100 | -> | Plus |
| arm_2R | 12118283..12119238 | 37..992 | 97 | -> | Plus |
BS12174.pep Sequence
Translation from 16 to 3171
> BS12174.pep
MSKNAGRTSSKNVKTEVPRKVTKSPATSGPATTRESKERRSLAKQPDSLE
GEKIARKTTTAAQPTTASKKPLATGKNKERESLSKRTTPSPGALRATTRH
TTTTTNPPLQSKTTKTTKLVAKSKPNAVLDTYHSVTVASPPQKRRGQAEQ
EKESPTPSSKEYSPVAQTQKEHKPQSPSKGDARIVPARSRTYTRTLDPEE
VVILKRESAKQRSEVEAKESEPVKQPVAFEVKFDEAKKPEPESDHYSDDF
ESYESDFETDASTPDEVESDEAQEPSSSEAEVEEEREEEDSEPTQNPITV
IQRDKDQERKLDSGHYDMHLRRNPLSSLSTQNQYDSFDTNSMANSEQLDS
GISTTGVEKPRSGEANVYYGGYSGFVSHPVISRRGEELMAKLRFDQLNYH
LFEMKPLSYEGFMQSYGKLNASQVATQTQSPHMDGECQTLEVHSRSSWTQ
HPPHYGGQFVLSCSVDAELDETWSKQPADEYEASISRLEQLHRLEQARSQ
QLQQKRLAKSTDLERLNSFLHRAGRLMGLVLEGKTTAHGQGNSPRNVPLQ
TGLLNALPVRRIFGSAGNGQLVVTVHECPADSNVYKEDFASLLMVWSLAN
PSQPLRLLSTWAEVSRVALSAQAQDIVVAGLRDGSVAMWDLRETHSYCSK
LDGHLTHFAATQSVVPMPEQQDKEVNAMDLGAVVDVRSFRSHLNAGGVAA
TSGLQTTYKEVQYASLNDSGLLTMWTLVEGASSTNSNEFSSPWARVKLLQ
SGSCDLRSYLERRLLKSHQSAYEKTKSLFQGNIYSDDVLRELNDTQTLTT
ALQGQGLQGLRFTSIDTGSELIYVCTNRNFVLCCTRSLKTERFARIAVNE
SRFLFPTSLCVLSNENYVAVGLSNGSVMILNCNQRQRQRQRNQQRPKTGL
PPATDEPDPETGKSCAIQNIILNERRSFDQQMDDNPTYDARPNTALELIE
RPRRSYEMRVFDQQLLLSGSGLRQHLVQALILSSDGWQLSALTNGTVRHY
DFYRDRELPVEELMDTRLKVTDIAGARSCGQEQVLLILDSTGKVQSRTLD
Y*
BS12174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15701-PA | 1051 | CG15701-PA | 1..1051 | 1..1051 | 5395 | 100 | Plus |
