Clone Sequence Records
BS12181.3prime Sequence
647 bp (647 high quality bases) assembled on 2006-06-16
> BS12181.3prime
ATGGTCTAGAAAGCTTTTATTTCACAGCATTTATTGAACTCTCAGGCAGA
ACTTTAGCCACTTTCCGTGGCTCCTTGATCGTGGTCTGGGGGCACTGCAT
CTCGCTCCAGCCGACCGGCACCATGGGCACCCGGGTCTTCCGGTAATCAC
TGGCATAGGCGATGACCACGCCGAGTTCATTTTCGGCGGTGGTCAGGAGG
AAGGACTGCTCCAGTTGGTTAATGACCCTCGCCAGGATGACATCGCCCGG
CCGGAAGGACTTGTAGATATCGACGCGATCTTTTTCGGTCTCCCGGACAT
CCTCCTTGCGCAGAAGTCCGCGGTAGCTGCTTTCCAGCAGCACATTTCGT
ACGCAGAAAATGGCGCACTTGGCGAATTTTGGAGTTGTGACGAGAACTCT
GGCTGTGACCACGTCTCCGGTGGCTGGGATGGTTAGATGAAATCCGGGCT
TATGCACACTAACCACCTGGCATTTATCACCCGAATCTTCGATGTTGACA
ATTCCAGACTTGGAGGCGTAAATGTAGCCATTCTGCTCGTAGGTGCCTAT
GCCCAGGACTATGCTGTCCTCGGTTCTGCAGAGTCCCTCCCCCGGGCAGG
CAGACTACAGTCTCATCCTGCTGTTCACTCATGTCGACTGATAACTT
BS12181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6249-PA | 615 | Csl4-RA | 40..615 | 592..17 | 2855 | 99.8 | Minus |
| CG6249-PA | 615 | Csl4-RA | 1..43 | 632..590 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-RA | 940 | CG6249-RA | 98..712 | 632..17 | 3040 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11122802..11123257 | 17..472 | 2280 | 100 | Plus |
| 2L | 23513712 | 2L | 11123312..11123470 | 473..632 | 735 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:36:36 has no hits.
BS12181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:18 Download gff for
BS12181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6249-PA | 1..615 | 17..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:51 Download gff for
BS12181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 105..719 | 17..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:37 Download gff for
BS12181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 98..712 | 17..632 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:37 Download gff for
BS12181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11122802..11123257 | 17..472 | 100 | <- | Plus |
| 2L | 11123312..11123470 | 473..632 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:51 Download gff for
BS12181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11122802..11123257 | 17..472 | 100 | <- | Plus |
| arm_2L | 11123312..11123470 | 473..632 | 98 | | Plus |
BS12181.5prime Sequence
645 bp (645 high quality bases) assembled on 2006-06-16
> BS12181.5prime
GAAGTTATCAGTCGACATGAGTGAACAGCAGGATGAGACTGTAGTCTGCC
TGCCCGGGGAGCGACTCTGCAGAACCGAGGACAGCATAGTCCTGGGCATA
GGCACCTACGAGCAGAATGGCTACATTTACGCCTCCAAGTCTGGAATTGT
CAACATCGAAGATTCGGGTGATAAATGCCAGGTGGTTAGTGTGCATAAGC
CCGGATTTCATCTAACCATCCCAGCCACCGGAGACGTGGTCACAGCCAGA
GTTCTCGTCACAACTCCAAAATTCGCCAAGTGCGCCATTTTCTGCGTACG
AAATGTGCTGCTGGAAAGCAGCTACCGCGGACTTCTGCGCAAGGAGGATG
TCCGGGAGACCGAAAAAGATCGCGTCGATATCTACAAGTCCTTCCGGCCG
GGCGATGTCATCCTGGCGAGGGTCATTAACCAACTGGAGCAGTCCTTCCT
CCTGACCACCGCCGAAAATGAACTCGGCGTGGTCATCGCCTATGCCAGTG
ATTACCGGAAGACCCGGGTGCCCATGGTGCCGGTCGGCTGGAGCGAGATG
CAGTGCCCCCAGACCACGATCAAGGAGCCACGGAAAGTGGCTAAAGTTCT
GCCTGAGAGTTCAATAAATGCTGTGAAATAAAAGCTTTCTAGACC
BS12181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6249-PA | 615 | Csl4-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-RA | 940 | CG6249-RA | 98..712 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11122802..11123257 | 631..176 | 2280 | 100 | Minus |
| 2L | 23513712 | 2L | 11123312..11123470 | 175..17 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:08:04 has no hits.
BS12181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:18 Download gff for
BS12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6249-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:41 Download gff for
BS12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 105..719 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:59 Download gff for
BS12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 98..712 | 17..631 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:59 Download gff for
BS12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11122802..11123257 | 176..631 | 100 | <- | Minus |
| 2L | 11123312..11123470 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:41 Download gff for
BS12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11122802..11123257 | 176..631 | 100 | <- | Minus |
| arm_2L | 11123312..11123470 | 17..175 | 100 | | Minus |
BS12181.complete Sequence
647 bp assembled on 2006-11-01
GenBank Submission: FJ637088
> BS12181.complete
GAAGTTATCAGTCGACATGAGTGAACAGCAGGATGAGACTGTAGTCTGCC
TGCCCGGGGAGCGACTCTGCAGAACCGAGGACAGCATAGTCCTGGGCATA
GGCACCTACGAGCAGAATGGCTACATTTACGCCTCCAAGTCTGGAATTGT
CAACATCGAAGATTCGGGTGATAAATGCCAGGTGGTTAGTGTGCATAAGC
CCGGATTTCATCTAACCATCCCAGCCACCGGAGACGTGGTCACAGCCAGA
GTTCTCGTCACAACTCCAAAATTCGCCAAGTGCGCCATTTTCTGCGTACG
AAATGTGCTGCTGGAAAGCAGCTACCGCGGACTTCTGCGCAAGGAGGATG
TCCGGGAGACCGAAAAAGATCGCGTCGATATCTACAAGTCCTTCCGGCCG
GGCGATGTCATCCTGGCGAGGGTCATTAACCAACTGGAGCAGTCCTTCCT
CCTGACCACCGCCGAAAATGAACTCGGCGTGGTCATCGCCTATGCCAGTG
ATTACCGGAAGACCCGGGTGCCCATGGTGCCGGTCGGCTGGAGCGAGATG
CAGTGCCCCCAGACCACGATCAAGGAGCCACGGAAAGTGGCTAAAGTTCT
GCCTGAGAGTTCAATAAATGCTGTGAAATAAAAGCTTTCTAGACCAT
BS12181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-RA | 615 | CG6249-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-RA | 940 | CG6249-RA | 98..712 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11122802..11123257 | 631..176 | 2280 | 100 | Minus |
| 2L | 23513712 | 2L | 11123312..11123470 | 175..17 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:42:15 has no hits.
BS12181.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:21 Download gff for
BS12181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:22 Download gff for
BS12181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 263..877 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:19 Download gff for
BS12181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 105..717 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:21 Download gff for
BS12181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 263..877 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:10 Download gff for
BS12181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 98..710 | 17..629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:10 Download gff for
BS12181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11122804..11123257 | 176..629 | 100 | <- | Minus |
| 2L | 11123312..11123470 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:19 Download gff for
BS12181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11122804..11123257 | 176..629 | 100 | <- | Minus |
| arm_2L | 11123312..11123470 | 17..175 | 100 | | Minus |
BS12181.pep Sequence
Translation from 16 to 630
> BS12181.pep
MSEQQDETVVCLPGERLCRTEDSIVLGIGTYEQNGYIYASKSGIVNIEDS
GDKCQVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLE
SSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQLEQSFLLTTAE
NELGVVIAYASDYRKTRVPMVPVGWSEMQCPQTTIKEPRKVAKVLPESSI
NAVK*
BS12181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-PA | 204 | CG6249-PA | 1..204 | 1..204 | 1045 | 100 | Plus |
