Clone Sequence Records
BS12194.3prime Sequence
757 bp (635 high quality bases) assembled on 2006-06-16
> BS12194.3prime
ATGGTCTAGAAAGCTTTTACTGGGTATTGGCCTCGATCCAGGTTAGGTAG
TAGGAGACACGGGTGGCCACATCCGGATACTTGCTGCCGCAGGGTCCGAA
GTTGAAGCTGGTCAAACCGCGAAGCACCTTGTCGTCATCGATGACAGCCG
CACCGGCATCCCCACGACAGATGCCCTCGCCTTCGGCTCTCGAGAGGCAG
ACGACGGATTCGTAGCCGTATCCGGCTTCCCATTCGCACAGGGATCGGCT
CAGCGTATTGTAGTTGGCCTTCTGCTGTTTATAGGATGCAGTACCATCCG
AAAGTTCACCCCATCCAGCCACATAGACCGGAGTTCCGTTGGGCAGCTCA
GCGTCCACATCTTCCGTCTCCTCATCAGTTGTGGGGGGCAGTGCGATGTC
TTGGATGCGATCGCTAAAGACCAGGGTCTCGTCCAGCTCCAGTATGGCGA
TGTCGTGCAGGAAGTTTCCGTACGATGGATGGATGATCACGCTCTTTACA
TTCACAATGCTGCCGCCGGCGTACTGGTTAATGGTGCCCAGGCGAACAGC
CAAGGTGCTGGCATCCACTGGGGTGATGCCCACGCTGGACACACAGTGGG
CGGCGGTCAGGATGTGGTTTGTTGAGATGATGGCGCCGGAGCAGACGTGG
GCCTTGTTGTATCTCACGGATGCGGACCAGGGGTACTCGCCCTGGGCAAC
GTCCTCGCCGCCAAGAATGCGACCTTGTGGCGAGGCTTCCGCGGAAAGGA
TCAGGCC
BS12194.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-PA | 786 | CG9673-RA | 46..786 | 757..17 | 3655 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-RB | 978 | CG9673-RB | 68..810 | 757..15 | 3685 | 99.7 | Minus |
CG9673-RA | 891 | CG9673-RA | 68..810 | 757..15 | 3685 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16702954..16703508 | 15..569 | 2760 | 99.8 | Plus |
X | 23542271 | X | 16703630..16703817 | 570..757 | 925 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:08:15 has no hits.
BS12194.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:20 Download gff for
BS12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-PA | 46..786 | 17..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:43 Download gff for
BS12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 68..814 | 10..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:12 Download gff for
BS12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 68..814 | 10..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:12 Download gff for
BS12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16703630..16703817 | 570..757 | 99 | | Plus |
X | 16702950..16703508 | 10..569 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:43 Download gff for
BS12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16596983..16597541 | 10..569 | 99 | <- | Plus |
arm_X | 16597663..16597850 | 570..757 | 99 | | Plus |
BS12194.5prime Sequence
785 bp (664 high quality bases) assembled on 2006-06-16
> BS12194.5prime
GAAGTTATCAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCC
TGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGC
ATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATC
CGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAA
ACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCA
GTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGC
CGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACG
GAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTC
TTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGA
GACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGG
CTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAG
GCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATA
CGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCT
GTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGC
GGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTAATCGGATGT
GGCCACCCGTGTCTCCTACTACCTAACCTGGATCG
BS12194.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-PA | 786 | CG9673-RA | 1..769 | 17..785 | 3770 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-RB | 978 | CG9673-RB | 18..791 | 12..785 | 3810 | 99.5 | Plus |
CG9673-RA | 891 | CG9673-RA | 18..791 | 12..785 | 3810 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16702973..16703508 | 785..250 | 2635 | 99.4 | Minus |
X | 23542271 | X | 16703630..16703867 | 249..12 | 1175 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:44:27 has no hits.
BS12194.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:21 Download gff for
BS12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-PA | 1..769 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:27 Download gff for
BS12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 16..791 | 9..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:27 Download gff for
BS12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 16..791 | 9..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:27 Download gff for
BS12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16702973..16703508 | 250..785 | 99 | <- | Minus |
X | 16703630..16703869 | 9..249 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:27 Download gff for
BS12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16597006..16597541 | 250..785 | 99 | <- | Minus |
arm_X | 16597663..16597902 | 9..249 | 99 | | Minus |
BS12194.complete Sequence
818 bp assembled on 2006-11-01
GenBank Submission: FJ637091
> BS12194.complete
GAAGTTATCAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCC
TGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGC
ATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATC
CGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAA
ACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCA
GTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGC
CGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACG
GAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTC
TTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGA
GACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGG
CTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAG
GCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATA
CGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCT
GTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGC
GGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTATCCGGATGT
GGCCACCCGTGTCTCCTACTACCTAACCTGGATCGAGGCCAATACCCAGT
AAAAGCTTTCTAGACCAT
BS12194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-RB | 786 | CG9673-PB | 1..786 | 17..802 | 3915 | 99.9 | Plus |
CG9673-RA | 786 | CG9673-PA | 1..786 | 17..802 | 3915 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-RB | 978 | CG9673-RB | 18..810 | 12..804 | 3935 | 99.7 | Plus |
CG9673-RA | 891 | CG9673-RA | 18..810 | 12..804 | 3935 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16702954..16703508 | 804..250 | 2760 | 99.8 | Minus |
X | 23542271 | X | 16703630..16703867 | 249..12 | 1175 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:49:57 has no hits.
BS12194.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:09 Download gff for
BS12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:09 Download gff for
BS12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 11..809 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:27 Download gff for
BS12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 23..806 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:10 Download gff for
BS12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 11..809 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:33 Download gff for
BS12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 23..806 | 17..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:33 Download gff for
BS12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16702958..16703508 | 250..800 | 99 | <- | Minus |
X | 16703630..16703862 | 17..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:27 Download gff for
BS12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16597663..16597895 | 17..249 | 100 | | Minus |
arm_X | 16596991..16597541 | 250..800 | 99 | <- | Minus |
BS12194.pep Sequence
Translation from 16 to 801
> BS12194.pep
MADPRITLGLGLLIFGLILSAEASPQGRILGGEDVAQGEYPWSASVRYNK
AHVCSGAIISTNHILTAAHCVSSVGITPVDASTLAVRLGTINQYAGGSIV
NVKSVIIHPSYGNFLHDIAILELDETLVFSDRIQDIALPPTTDEETEDVD
AELPNGTPVYVAGWGELSDGTASYKQQKANYNTLSRSLCEWEAGYGYESV
VCLSRAEGEGICRGDAGAAVIDDDKVLRGLTSFNFGPCGSKYPDVATRVS
YYLTWIEANTQ*
BS12194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-PB | 261 | CG9673-PB | 1..261 | 1..261 | 1362 | 100 | Plus |
CG9673-PA | 261 | CG9673-PA | 1..261 | 1..261 | 1362 | 100 | Plus |
spheroide-PA | 249 | CG9675-PA | 1..245 | 1..257 | 464 | 42.8 | Plus |
CG1304-PA | 260 | CG1304-PA | 8..257 | 6..260 | 420 | 35.2 | Plus |
Ser6-PA | 259 | CG2071-PA | 5..257 | 5..260 | 411 | 34.1 | Plus |