Clone BS12194 Report

Search the DGRC for BS12194

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG9673-RA
Protein status:BS12194.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12194.3prime Sequence

757 bp (635 high quality bases) assembled on 2006-06-16

> BS12194.3prime
ATGGTCTAGAAAGCTTTTACTGGGTATTGGCCTCGATCCAGGTTAGGTAG
TAGGAGACACGGGTGGCCACATCCGGATACTTGCTGCCGCAGGGTCCGAA
GTTGAAGCTGGTCAAACCGCGAAGCACCTTGTCGTCATCGATGACAGCCG
CACCGGCATCCCCACGACAGATGCCCTCGCCTTCGGCTCTCGAGAGGCAG
ACGACGGATTCGTAGCCGTATCCGGCTTCCCATTCGCACAGGGATCGGCT
CAGCGTATTGTAGTTGGCCTTCTGCTGTTTATAGGATGCAGTACCATCCG
AAAGTTCACCCCATCCAGCCACATAGACCGGAGTTCCGTTGGGCAGCTCA
GCGTCCACATCTTCCGTCTCCTCATCAGTTGTGGGGGGCAGTGCGATGTC
TTGGATGCGATCGCTAAAGACCAGGGTCTCGTCCAGCTCCAGTATGGCGA
TGTCGTGCAGGAAGTTTCCGTACGATGGATGGATGATCACGCTCTTTACA
TTCACAATGCTGCCGCCGGCGTACTGGTTAATGGTGCCCAGGCGAACAGC
CAAGGTGCTGGCATCCACTGGGGTGATGCCCACGCTGGACACACAGTGGG
CGGCGGTCAGGATGTGGTTTGTTGAGATGATGGCGCCGGAGCAGACGTGG
GCCTTGTTGTATCTCACGGATGCGGACCAGGGGTACTCGCCCTGGGCAAC
GTCCTCGCCGCCAAGAATGCGACCTTGTGGCGAGGCTTCCGCGGAAAGGA
TCAGGCC

BS12194.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-PA 786 CG9673-RA 46..786 757..17 3655 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RB 978 CG9673-RB 68..810 757..15 3685 99.7 Minus
CG9673-RA 891 CG9673-RA 68..810 757..15 3685 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16702954..16703508 15..569 2760 99.8 Plus
X 23542271 X 16703630..16703817 570..757 925 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 11:08:15 has no hits.

BS12194.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:20 Download gff for BS12194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-PA 46..786 17..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:43 Download gff for BS12194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 68..814 10..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:12 Download gff for BS12194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 68..814 10..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:12 Download gff for BS12194.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16703630..16703817 570..757 99   Plus
X 16702950..16703508 10..569 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:43 Download gff for BS12194.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16596983..16597541 10..569 99 <- Plus
arm_X 16597663..16597850 570..757 99   Plus

BS12194.5prime Sequence

785 bp (664 high quality bases) assembled on 2006-06-16

> BS12194.5prime
GAAGTTATCAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCC
TGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGC
ATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATC
CGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAA
ACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCA
GTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGC
CGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACG
GAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTC
TTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGA
GACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGG
CTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAG
GCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATA
CGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCT
GTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGC
GGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTAATCGGATGT
GGCCACCCGTGTCTCCTACTACCTAACCTGGATCG

BS12194.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-PA 786 CG9673-RA 1..769 17..785 3770 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RB 978 CG9673-RB 18..791 12..785 3810 99.5 Plus
CG9673-RA 891 CG9673-RA 18..791 12..785 3810 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16702973..16703508 785..250 2635 99.4 Minus
X 23542271 X 16703630..16703867 249..12 1175 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 16:44:27 has no hits.

BS12194.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:21 Download gff for BS12194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-PA 1..769 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:27 Download gff for BS12194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 16..791 9..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:27 Download gff for BS12194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 16..791 9..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:27 Download gff for BS12194.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16702973..16703508 250..785 99 <- Minus
X 16703630..16703869 9..249 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:27 Download gff for BS12194.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16597006..16597541 250..785 99 <- Minus
arm_X 16597663..16597902 9..249 99   Minus

BS12194.complete Sequence

818 bp assembled on 2006-11-01

GenBank Submission: FJ637091

> BS12194.complete
GAAGTTATCAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCC
TGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGC
ATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATC
CGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAA
ACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCA
GTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGC
CGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACG
GAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTC
TTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGA
GACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGG
CTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAG
GCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATA
CGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCT
GTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGC
GGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTATCCGGATGT
GGCCACCCGTGTCTCCTACTACCTAACCTGGATCGAGGCCAATACCCAGT
AAAAGCTTTCTAGACCAT

BS12194.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RB 786 CG9673-PB 1..786 17..802 3915 99.9 Plus
CG9673-RA 786 CG9673-PA 1..786 17..802 3915 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RB 978 CG9673-RB 18..810 12..804 3935 99.7 Plus
CG9673-RA 891 CG9673-RA 18..810 12..804 3935 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16702954..16703508 804..250 2760 99.8 Minus
X 23542271 X 16703630..16703867 249..12 1175 99.6 Minus
Blast to na_te.dros performed on 2014-11-27 07:49:57 has no hits.

BS12194.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:09 Download gff for BS12194.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..786 17..802 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:09 Download gff for BS12194.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 11..809 9..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:27 Download gff for BS12194.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 23..806 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:10 Download gff for BS12194.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 11..809 9..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:33 Download gff for BS12194.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 23..806 17..800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:33 Download gff for BS12194.complete
Subject Subject Range Query Range Percent Splice Strand
X 16702958..16703508 250..800 99 <- Minus
X 16703630..16703862 17..249 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:27 Download gff for BS12194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16597663..16597895 17..249 100   Minus
arm_X 16596991..16597541 250..800 99 <- Minus

BS12194.pep Sequence

Translation from 16 to 801

> BS12194.pep
MADPRITLGLGLLIFGLILSAEASPQGRILGGEDVAQGEYPWSASVRYNK
AHVCSGAIISTNHILTAAHCVSSVGITPVDASTLAVRLGTINQYAGGSIV
NVKSVIIHPSYGNFLHDIAILELDETLVFSDRIQDIALPPTTDEETEDVD
AELPNGTPVYVAGWGELSDGTASYKQQKANYNTLSRSLCEWEAGYGYESV
VCLSRAEGEGICRGDAGAAVIDDDKVLRGLTSFNFGPCGSKYPDVATRVS
YYLTWIEANTQ*

BS12194.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-PB 261 CG9673-PB 1..261 1..261 1362 100 Plus
CG9673-PA 261 CG9673-PA 1..261 1..261 1362 100 Plus
spheroide-PA 249 CG9675-PA 1..245 1..257 464 42.8 Plus
CG1304-PA 260 CG1304-PA 8..257 6..260 420 35.2 Plus
Ser6-PA 259 CG2071-PA 5..257 5..260 411 34.1 Plus