BS12201.complete Sequence
1256 bp assembled on 2006-11-01
GenBank Submission: FJ637092
> BS12201.complete
GAAGTTATCAGTCGACATGAGTCAAACATTGATCCGTCGTCTCTTCAATC
AAGCTTGTAGCAGAAATATTTTTATTTTGAACCAAAGCTTGTTATCTTCA
CATGAACCCATTTTACCAGGTTACATTGGTTTACGTAATACCAGCTTCTT
TAACAAATTACCTGCTGAAGACATTTGGCGCGGAGTAACTGCGGTTAGCA
ATGCTGGAAAAAAAAGAGGCCGTGGGAAAGGAAGTGGAAAAAAAGTTGCA
AAGGATCTTAACAAAGGGCAATCTATCGGATTCGGAAAATGCGGTCGCAT
ATGGCCTGGATTGAATTCACCTCTTATACGAGGAAACGAGTTAATTAATC
AGCAGAAACTCAATGAGAATTTAGATAGAGAAAATGGTATTTTAAAATTA
CGCGATTCAATGGGAAGTTTTAAATTGATGAAACTAAATCCAATAGACCG
AGGTTGGTCTGGAAGTAAAATGCCCGGCCGAAGCATTGGACCTCCTGATC
CTGTTGGCGACGAAGAGTTTGTGTCATTTGATACTAGAGTTTTAGAAAAC
AAAATTGTTTTTATTATGAAAGGAAATATGGGAAGAAAACGAAGATATTC
CGTTCTTTCAGTCACGGGAAATGGTAATGGTTTGGCAGGATTCGCTACCG
CTAAAGCGCCAGAAGTTCGTACGGCCCTTCGAAAATCAAAGAACCGAGCA
GGACAAAAACTAATCAATATAAGCCTTTGTGAAAATAGAACAATTTTTCA
TGACTTTCGTACAGATTTCGGAAAAACAAAAATTTTTTGTTTTCAGAAAC
CTGATGGATACGGCTTAGTCTGTCACCGGGCAATTCAGACAATTTGTAAA
GTTATAGGTATCAAGGATTTATATGCCAAAATTGAGGGGTCTACGAATAT
CCAGAATATTGCAAAGGCATTTTTTATTGGTCTGATGACGCAAAGGTCCT
ATCAGTATATTGCTAACGAAACAAATTCAAACATTGTTCAACTGCAAAAG
ACAAGAAATAGATTCATTGATGTAAAAGGAATGCCTTTTCCTAATTCAAC
TCTAACGCAGAACACCCAAGAAATTGACTATATGCATTTCACATTAGGAA
ATCAAATAGTTTTACAGCGAAAAGGCACAGTACCATTTTATGTTTATAGC
AAAGGACATGACTTGCATCAATTTAAAAAGGAGCGATTTCGGAACCAAGT
TAATGTTCGGCTACACAAGCTAGTTAATGCTTATGATTAAAAGCTTTCTA
GACCAT
BS12201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-RA | 1224 | CG40049-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
| mRpS5-RC | 1224 | CG40049-PC | 1..1224 | 17..1240 | 6120 | 100 | Plus |
| mRpS5-RD | 144 | CG40049-PD | 1..142 | 17..158 | 710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-RA | 1379 | CG40049-RA | 113..1336 | 17..1240 | 6120 | 100 | Plus |
| mRpS5-RC | 1422 | CG40049-RC | 156..1379 | 17..1240 | 6120 | 100 | Plus |
| mRpS5-RD | 479 | CG40049-RD | 113..254 | 17..158 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24542410..24543491 | 159..1240 | 5410 | 100 | Plus |
| 3L | 28110227 | 3L | 24546110..24546989 | 361..1240 | 4400 | 100 | Plus |
| 3L | 28110227 | 3L | 24549608..24550487 | 361..1240 | 4400 | 100 | Plus |
| 3L | 28110227 | 3L | 24553106..24553985 | 361..1240 | 4400 | 100 | Plus |
| 3L | 28110227 | 3L | 24537475..24537616 | 17..158 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 24536289..24536364 | 83..158 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:50:29 has no hits.
BS12201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:11 Download gff for
BS12201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RA | 1..1224 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:11 Download gff for
BS12201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RA | 139..1371 | 11..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:14 Download gff for
BS12201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 156..1377 | 17..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:11 Download gff for
BS12201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RA | 139..1371 | 11..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:11 Download gff for
BS12201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 156..1377 | 17..1238 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:11 Download gff for
BS12201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24537475..24537616 | 17..158 | 100 | -> | Plus |
| 3L | 24542410..24543489 | 159..1238 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:14 Download gff for
BS12201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24530574..24530715 | 17..158 | 100 | -> | Plus |
| arm_3L | 24535510..24536589 | 159..1238 | 100 | | Plus |
BS12201.pep Sequence
Translation from 16 to 1239
> BS12201.pep
MSQTLIRRLFNQACSRNIFILNQSLLSSHEPILPGYIGLRNTSFFNKLPA
EDIWRGVTAVSNAGKKRGRGKGSGKKVAKDLNKGQSIGFGKCGRIWPGLN
SPLIRGNELINQQKLNENLDRENGILKLRDSMGSFKLMKLNPIDRGWSGS
KMPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVT
GNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTD
FGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGSTNIQNIAK
AFFIGLMTQRSYQYIANETNSNIVQLQKTRNRFIDVKGMPFPNSTLTQNT
QEIDYMHFTLGNQIVLQRKGTVPFYVYSKGHDLHQFKKERFRNQVNVRLH
KLVNAYD*
BS12201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-PA | 407 | CG40049-PA | 1..407 | 1..407 | 2130 | 100 | Plus |
| mRpS5-PC | 407 | CG40049-PC | 1..407 | 1..407 | 2130 | 100 | Plus |
| mRpS5-PD | 47 | CG40049-PD | 1..47 | 1..47 | 240 | 100 | Plus |
