BS12203.complete Sequence
638 bp assembled on 2006-11-01
GenBank Submission: FJ637094
> BS12203.complete
GAAGTTATCAGTCGACATGTCTACGACACCAAAATCGAGCGAAGATTTGC
TGGGCGAATCTTGGATCGAACTCAGCACAACAGCTGCGATGGCTGGCATC
AAGAGCCCCGACAGAATCACTCCGTTGCCATTCAACAATGGCGAGGAGTA
CCTGAGACTTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGTCGAGCCGTG
TCGTCTCCTTGGCCAGCTCCCGTCGTGATACGCCCCGTGATAGCCCCAAG
AGTCCACCGAACAGTCCCCAGTCGGAGCTCTGTCCGGATGATGAGCTCAG
AAACGTGTACATCAACTACTGGACCAAGGGAGGAGACAAACAGAATGCAG
GCAATGAAGATTGGCTGAAGAACTGGAATCAGCCACCCAGTAGCTGGAAC
ATTGAGGATTCAAGTCGGGATGCCGGCGACGAGGGCGAGAAAAAGAAGAC
TAACACAGGCTACTCCATCCGTTTGAAGCGACTGGGCTCCAACTCGTTGT
TCTCCCGCGAAATTCTGTACTCGCTGCTGGTGACCAACGTCCTGTCCCTG
CTGCTGGGAGCTGGATTCGGGCTATGGTTGAGCAAGCGTGGCATACTCCT
TACCCGTGTGGTCATTGACTGAAAGCTTTCTAGACCAT
BS12203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RA | 606 | CG5059-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
| CG5059-RB | 582 | CG5059-PB | 17..582 | 57..622 | 2830 | 100 | Plus |
| CG5059-RE | 534 | CG5059-PE | 1..534 | 89..622 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RA | 1725 | CG5059-RA | 387..995 | 17..625 | 3045 | 100 | Plus |
| CG5059-RE | 1543 | CG5059-RE | 244..812 | 57..625 | 2845 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 178..746 | 57..625 | 2845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516133 | 336..56 | 1375 | 99.3 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 571..388 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 390..327 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515329..20515384 | 625..570 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 20518968..20519007 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:47 has no hits.
BS12203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:43 Download gff for
BS12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:34 Download gff for
BS12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 426..1034 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:13 Download gff for
BS12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..991 | 17..621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:43 Download gff for
BS12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 426..1034 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:49 Download gff for
BS12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..991 | 17..621 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:49 Download gff for
BS12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515333..20515383 | 571..621 | 100 | <- | Minus |
| 3L | 20515444..20515623 | 391..570 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 329..390 | 100 | <- | Minus |
| 3L | 20515861..20516132 | 57..328 | 100 | <- | Minus |
| 3L | 20518968..20519007 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:13 Download gff for
BS12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508433..20508483 | 571..621 | 100 | <- | Minus |
| arm_3L | 20508544..20508723 | 391..570 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 329..390 | 100 | <- | Minus |
| arm_3L | 20508961..20509232 | 57..328 | 100 | <- | Minus |
| arm_3L | 20512068..20512107 | 17..56 | 100 | | Minus |
BS12203.pep Sequence
Translation from 16 to 621
> BS12203.pep
MSTTPKSSEDLLGESWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLR
EAQRESNQSSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYIN
YWTKGGDKQNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYS
IRLKRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVI
D*
BS12203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PA | 201 | CG5059-PA | 1..201 | 1..201 | 1046 | 100 | Plus |
| CG5059-PB | 193 | CG5059-PB | 6..193 | 14..201 | 979 | 99.5 | Plus |
| CG5059-PE | 177 | CG5059-PE | 1..177 | 25..201 | 927 | 100 | Plus |
| CG5059-PD | 177 | CG5059-PD | 1..177 | 25..201 | 927 | 100 | Plus |
| CG5059-PC | 177 | CG5059-PC | 1..177 | 25..201 | 927 | 100 | Plus |
