BS12204.complete Sequence
1352 bp assembled on 2006-11-01
GenBank Submission: FJ637095
> BS12204.complete
GAAGTTATCAGTCGACATGTCGGAATACAAGTACCTCTCGGGTTTTGGGT
CTCACTTCTCATCTGAGGATGAGCGGTATCCCAACTCCTTGCCAGTGGGA
CAGAACTCACCTCAAGTGTGCCCATACAAACTCTATGCGGAGCAGCTATC
CGGAAGTGCCTTCACTGCGCCCAGGACGGAGAATATGCGCACGTGGCTCT
ACAGGAAGTTGCCCTCTGCCGCGCACCTTCCATTCCAGCCCTTCAAGGGA
GCTGAGTACTTTAGTCAAAACTGGGATGAGCAGCCACCGAATCCAAACCA
GCTTCGTTGGAAACCCTTTGACTTGCCTCCAAAGGATGGAAAAAATGTGA
ACTTTGTGGAAGGCTTGCACACGGTTTGTGGAGCGGGAGATCCCAGATCT
CGTCATGGTCTTGCCATACACATTTACTCCTGCAATGGCTCGATGGATAA
CTCAGCTTTCTATAACAGCGATGGTGATTTTTTGATTGTGCCCCAGCAAG
GAGTCTTAGATATAACCACAGAGTTTGGAAGGATGTCTGTAGCCCCAAAT
GAGATCTGCGTTATACCACAGGGAATACGATTTGCTGTAAATGTGGATTC
TCCTTCTAGGGGTTATATCCTGGAGGTCTATGATGATCACTTCGTTTTGC
CGGACTTGGGTCCCATTGGTGCTAATGGTTTGGCCAATCCCAGAGATTTC
GAGACTCCTGTGGCGTGGTTCGATGATCGGGATGTAAAGGACTTCCAGGT
AATTTCGAAATTCCAAGGTCGCCTCTTCGTGGCCAAGCAAAATCACACCG
TCTTCGATGTGGTGGCTTGGCATGGTAACTATGTGCCCTTCAAGTACGAT
CTGTCCAAGTTCATGGTGATTAACTCGGTTAGCTTTGACCATTGTGACCC
CAGCATTTTTACCGTGCTCACTTGTCCCAGCTTACGAGCTGGAACGGCCA
TAGCAGACTTTGTGATCTTTCCACCCCGTTGGTCAGTGCAGGAGCACACC
TTCAGGCCACCCTATTACCACAGGAACTGCATGAGCGAGTTCATGGGCCT
AATTCTGGGCAAGTATGAGGCCAAGGAGGATGGCTTTGCGGCAGGAGGAG
CGACCCTCCATTCCATGATGACGCCACATGGTCCAGATGTCAAGTGCTTT
GAAGGTGCCTCGAATGCCAAACTGGTGCCGGAACGCGTGGCCGAGGGAAC
TCAGGCCTTCATGTTCGAATCCTCTCTAAGTTTGGCCGTTACCAAGTGGG
GCGAGGAGACCTGCCAAAAACTGGATGCCGCATATTACGAATGCTGGCAG
GCGCTGAAGAACAACTTTCAAATAACTAAAAATTAGAAGCTTTCTAGACC
AT
BS12204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hgo-RA | 1320 | CG4779-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hgo-RA | 1445 | CG4779-RA | 38..1360 | 14..1336 | 6615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11137762..11138049 | 736..1023 | 1425 | 99.7 | Plus |
| 2L | 23513712 | 2L | 11136804..11137075 | 30..301 | 1360 | 100 | Plus |
| 2L | 23513712 | 2L | 11137142..11137330 | 300..488 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 11138104..11138286 | 1023..1205 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 11137568..11137701 | 607..740 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 11138347..11138480 | 1203..1336 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 11137395..11137517 | 488..610 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:53:54 has no hits.
BS12204.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:13 Download gff for
BS12204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hgo-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:14 Download gff for
BS12204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hgo-RA | 34..1365 | 9..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:22 Download gff for
BS12204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hgo-RA | 41..1360 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:13 Download gff for
BS12204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hgo-RA | 34..1365 | 9..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:58 Download gff for
BS12204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hgo-RA | 41..1360 | 17..1336 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:58 Download gff for
BS12204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11138349..11138480 | 1205..1336 | 100 | | Plus |
| 2L | 11137144..11137330 | 302..488 | 100 | -> | Plus |
| 2L | 11137396..11137516 | 489..609 | 100 | -> | Plus |
| 2L | 11137571..11137701 | 610..740 | 100 | -> | Plus |
| 2L | 11137767..11138048 | 741..1022 | 100 | -> | Plus |
| 2L | 11138104..11138285 | 1023..1204 | 100 | -> | Plus |
| 2L | 11136806..11137075 | 32..301 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:22 Download gff for
BS12204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11136806..11137075 | 32..301 | 100 | -> | Plus |
| arm_2L | 11137144..11137330 | 302..488 | 100 | -> | Plus |
| arm_2L | 11137396..11137516 | 489..609 | 100 | -> | Plus |
| arm_2L | 11137571..11137701 | 610..740 | 100 | -> | Plus |
| arm_2L | 11137767..11138048 | 741..1022 | 100 | -> | Plus |
| arm_2L | 11138104..11138285 | 1023..1204 | 100 | -> | Plus |
| arm_2L | 11138349..11138480 | 1205..1336 | 100 | | Plus |
BS12204.pep Sequence
Translation from 16 to 1335
> BS12204.pep
MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFT
APRTENMRTWLYRKLPSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRWKP
FDLPPKDGKNVNFVEGLHTVCGAGDPRSRHGLAIHIYSCNGSMDNSAFYN
SDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRFAVNVDSPSRGY
ILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVKDFQVISKFQ
GRLFVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTV
LTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKY
EAKEDGFAAGGATLHSMMTPHGPDVKCFEGASNAKLVPERVAEGTQAFMF
ESSLSLAVTKWGEETCQKLDAAYYECWQALKNNFQITKN*
BS12204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hgo-PA | 439 | CG4779-PA | 1..439 | 1..439 | 2398 | 100 | Plus |
