BS12206.complete Sequence
2372 bp assembled on 2009-12-07
GenBank Submission: KX804641
> BS12206.complete
GAAGTTATCAGTCGACATGCTGCGCTACCTGCTCATTCTTTGCGCCCTCG
GAAGCGCTACTTGCGGCGATGTTGAGCTACTAACTCAAACTGTCTATGGC
TTCCTGGACTTCACAACCACGATTGGGAATACCGTCATGGTGTTCTCACC
CCAAAGTTCTCCAGCCTTTGAACTTAAATCCAACGACACGCACGAAATAA
TAAATATTATAGAGACTAAGCCGAAAGTGACGAAGAAGGAAAAGGAGAAT
GTCGGCATCAAGCCAACGCCTTTGATCGTGACTCACTCGAATGAAATTCC
CGAAACCGAGACATCCCAGATTGAATCTTACAACATAAGTCTCTCCAACT
CGCCCATCCAAACGCTTTTGAATACCCCCGAATACGATCTGCTCTCCCGC
CAGCCCGAGCAGTTTGCCGAAGAAACCTATCGCCTGGTCAACTTCAAGTC
CAAGAGCGAGGCTGATCGCCAAAGGATATACCCGTCCAAGAAGGAGCCCG
TACATGGCTACCAGGCTACGAGATCCACTGAATTCAGGAGCATTGTGACG
GCAACCAAGGACTCTGGTAAATTCTCCAAGGTCTCCCAGGTTCACGCAGT
CTCCAGTGTGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGACCAACAAAC
CAGTTACGCCCTCGATCCAGCCGAGCAGGACTCTGAAGGAGTCCTCTATC
CAGACCCAACTAGCCAGCAAGCCACCAAGGAAGAGCCACCAAAGTGGTCG
CGACAACCGAGGATCGTCGGGCACCAGAAAGCCTTCGCGTCCCAAGGGAA
AGCGGAGGAACAAACACACCCAGAGTTCCAAGCCGACAGTAGCTCCATCA
GCAACTGAAACTACCTCCCGCCACTCGTATCGGTCGAAAGCAAATGCGAA
TGCTGTGCAGGAGGAGCCAGTGTCCGTCGTGAGTCCCAATGCATTCAAGC
TCAACAGGCGTCCTGGCAGATGGCAGTACAAGTCCTCGCCGAAGCCCAAG
GTGAACATAAGGAAGAACGCAAACCCCAATCTGCCCACCACCGTTCAAAA
CGACACGGCTCCCAGTGATGAGATCCCCGTGGACATCATCACCAACCAGG
CCATAAACAACGGCAGGGATCTTGAGGCGTCCGGATCACAGAACGGCCCA
GTTGCGAACAACAATAACGACGATCCCAACTCCAAATACTTTGTGCAGAC
GTTGAACGTTGAGATATCGACACCGCAACCATTCATAGACACCTATTACG
AAATTGCGACCATTAAGACTCCGTTTATATTCCAGGCTGGCGTGGTTAAG
AAAACGCGCTTCCTGACCGTCACCTCAACCATTGAGAAGGTGATCCAGGA
GGAGCACACCAAGGAGTACTCCGAAGACGATGGCCCGCTGACGGAGAACA
TTTTGGAGGCCACCGCCAGCACCGATGATAAGACCTTAACAGGCAGCGTT
ACGACCTTGAAGCCCATCTATCTGGGCGAGGAGACCGAGACCCCCAGCCT
GGAGACCATAACGGAGTCCTTTTCCATAACGCACACCAAGCTGAAGACCC
AGATCCTCCCAGTTGTGTACGCAAAAAGGAACGAGACCATCCAAGTTACC
CTAGTTCAGACGTACGATTACACCAGTCTCATCACTGTAACACAGACCAT
TTCCCCCTTGAGCGACGACTTCAATCCCTCAAAGAACTTCAAGGACTTCG
AAGGAAGTTTGGACGAGGCTGGGTCGGAAATCAACCTGGACCTCGAGTTC
GGAGATGAAGATAATACGGGCAAATTCGACGCAAAGATTAAACCAAAACT
CAAAGTTGAGGCCAAGAGTAATGTAACTAGCCCGATAAACCCTCTGCTCC
CGGAATCGATTAGCTTCCCGGAAACGCTGCAAAACAGCTTGATAACTTCC
ACGCGACCCGTGATCAAGCTCGAGACCATCTGGGAGTCCCATGTGGTGCC
GCTTGTCAGAGGCACCGAGACCATCATGAGAACCCTCTCCAAGTCCGTGG
GTGTGGTGGAGAAGACGGAATACGTCACTGATGTCGCCACGATTTCCATG
CCAACGCCATCCTCGCAGTATCCCTTCTCGATCAACCCATTCAATCCCTT
CAACCCACTCTTGCCCATTGCCCCGCAACAGTTCATCACATCCACCGAGG
TCCAGCAGTCCATGGTAACGGAAACGAGCTCCAAGGTTCTAAAGCTGACC
TTTGGCGCGAGGACCGCCTACACCACCATCTTCTCAACCTCTGTCGTTCC
CACAGCTGTCACTAGATTAATAACCGCCACCATTCCCGGCCAGCCAGGCC
AATCCTTCCCCAACTACTTTCCGCCTCCTTACAATCCATTCGCCTATGTT
GGCTAGAAGCTTTCTAGACCAT
BS12206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16786-RC | 2340 | CG16786-PC | 1..2340 | 17..2356 | 11700 | 100 | Plus |
| CG16786-RA | 2340 | CG16786-PA | 1..2340 | 17..2356 | 11700 | 100 | Plus |
| CG16786-RB | 2340 | CG16786-PB | 1..2340 | 17..2356 | 11700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16786-RC | 2931 | CG16786-RC | 307..2646 | 17..2356 | 11700 | 100 | Plus |
| CG16786-RA | 2800 | CG16786-RA | 307..2646 | 17..2356 | 11700 | 100 | Plus |
| CG16786-RB | 2815 | CG16786-RB | 322..2661 | 17..2356 | 11700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24084929..24086002 | 1283..2356 | 5370 | 100 | Plus |
| 2R | 25286936 | 2R | 24083651..24084286 | 170..805 | 3180 | 100 | Plus |
| 2R | 25286936 | 2R | 24084338..24084820 | 804..1286 | 2415 | 100 | Plus |
| 2R | 25286936 | 2R | 24083470..24083584 | 56..170 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 24083030..24083069 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6046..6118 | 167..237 | 116 | 67.6 | Plus |
BS12206.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:52 Download gff for
BS12206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16786-RA | 357..2696 | 17..2356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:25 Download gff for
BS12206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16786-RB | 322..2661 | 17..2356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:33 Download gff for
BS12206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16786-RA | 357..2696 | 17..2356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:39 Download gff for
BS12206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16786-RB | 322..2661 | 17..2356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:39 Download gff for
BS12206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24083030..24083069 | 17..56 | 100 | -> | Plus |
| 2R | 24083471..24083584 | 57..170 | 100 | -> | Plus |
| 2R | 24083652..24084285 | 171..804 | 100 | -> | Plus |
| 2R | 24084339..24084819 | 805..1285 | 100 | -> | Plus |
| 2R | 24084932..24086002 | 1286..2356 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:25 Download gff for
BS12206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19970553..19970592 | 17..56 | 100 | -> | Plus |
| arm_2R | 19970994..19971107 | 57..170 | 100 | -> | Plus |
| arm_2R | 19971175..19971808 | 171..804 | 100 | -> | Plus |
| arm_2R | 19971862..19972342 | 805..1285 | 100 | -> | Plus |
| arm_2R | 19972455..19973525 | 1286..2356 | 100 | | Plus |
BS12206.pep Sequence
Translation from 16 to 2355
> BS12206.pep
MLRYLLILCALGSATCGDVELLTQTVYGFLDFTTTIGNTVMVFSPQSSPA
FELKSNDTHEIINIIETKPKVTKKEKENVGIKPTPLIVTHSNEIPETETS
QIESYNISLSNSPIQTLLNTPEYDLLSRQPEQFAEETYRLVNFKSKSEAD
RQRIYPSKKEPVHGYQATRSTEFRSIVTATKDSGKFSKVSQVHAVSSVEK
KSKPRQSRTNKPVTPSIQPSRTLKESSIQTQLASKPPRKSHQSGRDNRGS
SGTRKPSRPKGKRRNKHTQSSKPTVAPSATETTSRHSYRSKANANAVQEE
PVSVVSPNAFKLNRRPGRWQYKSSPKPKVNIRKNANPNLPTTVQNDTAPS
DEIPVDIITNQAINNGRDLEASGSQNGPVANNNNDDPNSKYFVQTLNVEI
STPQPFIDTYYEIATIKTPFIFQAGVVKKTRFLTVTSTIEKVIQEEHTKE
YSEDDGPLTENILEATASTDDKTLTGSVTTLKPIYLGEETETPSLETITE
SFSITHTKLKTQILPVVYAKRNETIQVTLVQTYDYTSLITVTQTISPLSD
DFNPSKNFKDFEGSLDEAGSEINLDLEFGDEDNTGKFDAKIKPKLKVEAK
SNVTSPINPLLPESISFPETLQNSLITSTRPVIKLETIWESHVVPLVRGT
ETIMRTLSKSVGVVEKTEYVTDVATISMPTPSSQYPFSINPFNPFNPLLP
IAPQQFITSTEVQQSMVTETSSKVLKLTFGARTAYTTIFSTSVVPTAVTR
LITATIPGQPGQSFPNYFPPPYNPFAYVG*
BS12206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16786-PC | 779 | CG16786-PC | 1..779 | 1..779 | 3979 | 100 | Plus |
| CG16786-PA | 779 | CG16786-PA | 1..779 | 1..779 | 3979 | 100 | Plus |
| CG16786-PB | 779 | CG16786-PB | 1..779 | 1..779 | 3979 | 100 | Plus |
| CG17211-PA | 1354 | CG17211-PA | 645..1086 | 178..582 | 169 | 23.3 | Plus |
