BS12207.complete Sequence
1940 bp assembled on 2008-08-15
GenBank Submission: KX800267
> BS12207.complete
GAAGTTATCAGTCGACATGCCAGCCATTGGAATCGATTTGGGCACCACAT
ACTCCTGCGTGGGAGTCTTCCAGTACGGAAAAGTGGAGATCATTGCCAAC
GACCAGGGTAACCGTACCACACCATCGTACGTGGCCTTCACCGACTCGGA
ACGCCTTATTGGAGATGCCGCCAAGAACCAGGTGGCCATGAACCCCAAGA
ACTCTGTGTTCGATGCCAAACGCCTGATTGGGCGTCGTTTCGACGATTCC
AAGATCCAGGAGGACATTAAGCACTGGCCGTTCAAAGTGATCAACGACAA
CGGCAAACCAAAGATAAGCGTGGAGTTCAAGGGCGCGAATAAGTGCTTCT
CTCCCGAGGAGATTAGCTCGATGGTACTCACCAAAATGAAGGAGACTGCA
GAAGCCTACCTGGGCACTACAGTGAAGGACGCTGTCATCACAGTGCCGGC
CTACTTCAACGACTCCCAGCGCCAGGCAACAAAGGATGCTGGTGCCATCG
CTGGCATCAATGTGCTCCGCATCATCAACGAGCCAACAGCGGCGGCTCTG
GCCTACGGCCTGGACAAGAATCTGAAGGGAGAGCGCAATGTGCTGATTTT
CGATTTGGGCGGTGGTACTTTTGACGTCTCCATCTTGACCATTGACGAGG
GATCCCTGTTTGAGGTGCGCTCGACTGCGGGAGACACACATCTGGGTGGC
GAGGACTTCGACAACCGATTGGTTAACCACTTTGCCGAGGAGTTTAAGCG
CAAGTACAAAAAGGATCTGCGCTCCAACCCACGCGCACTGCGTCGTCTTC
GCACGGCAGCCGAGCGCGCAAAGCGCACCCTTTCCTCCAGCACGGAGGCT
TCTTTGGAGATTGACGCCCTGTACGAGGGACACGACTTCTACTCGAAGGT
GAGCCGCGCCAGATTCGAGGAACTTTGCGGTGACCTCTTCCGCAACACAC
TGGAGCCAGTTGAGAAGGCACTCAAGGACGCTAAAATGGACAAGAGCCAG
ATCCATGACATAGTCCTGGTTGGAGGCTCCACTCGTATTCCCAAGGTTCA
GAACCTGCTGCAGAACTTCTTCGGCGGAAAGACCCTGAACTTGTCAATCA
ATCCGGACGAGGCGGTGGCCTACGGAGCAGCCATCCAGGCAGCCATTCTG
TCGGGCGACAAGAGCAGCGAGATCAAGGATGTCCTACTGGTCGATGTTGC
CCCACTCTCGTTGGGCATAGAAACCGCCGGCGGGGTGATGACCAAGCTGA
TTGAGCGCAACAGCCGCATTCCATGCAAGCAGTCCAAGACCTTCACCACC
TATGCCGACAACCAGCCGGCGGTGACCATTCAAGTGTTTGAGGGCGAGAG
GGCTCTGACCAAGGACAACAATGTATTGGGCACATTCGATCTCACTGGCG
TTCCACCCGCACCCCGTGGAGTGCCCAAGATCGACGTTACTTTCGATTTG
GACGCAAACGGTATCCTGAATGTGACCGCCAAGGAGCAGGGCACTGGCAA
CGCCAAGAACATTACCATCAAGAACGACAAGGGTCGTCTGTCGCAGGCGG
ACATCGACCGCATGCTCAGTGAGGCGGAGAAGTACGCCGAGGAGGACGAG
CGCCATCGCCAGCGGATCGCCGCCCGCAATCAACTGGAGACCTATTTGTT
TGGTGTAAAGGAGGCGGCCGAGAATGGTGGCGATCGCATCAGTGCAGCCG
ACAAGAGCAGTATTGTGGAGCGTTGCAGCGAGGCGATGAAGTGGTTGGAC
AGCAACACCACCGCCGAGAAGGAGGAGTACGAGTACAAACTGAAGGAACT
GGAACAGTTCTGCAGCCCCATCATGACCAAGATGCACAAGGGAGGTGGAG
ATGGCCAGCAGGCTCCAAACTTTGGACAGCAAGCTGGCGGTTATAAGGGT
CCCACCGTCGAGGAGGTGGACTAAAAGCTTTCTAGACCAT
BS12207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp68-RA | 1908 | CG5436-PA | 1..1908 | 17..1924 | 9540 | 100 | Plus |
| Hsp70Ab-RA | 1929 | CG18743-PA | 1..1598 | 17..1614 | 3235 | 80.2 | Plus |
| Hsp70Aa-RA | 1929 | CG31366-PA | 1..1598 | 17..1614 | 3235 | 80.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp68-RA | 2231 | CG5436-RA | 207..2114 | 17..1924 | 9540 | 100 | Plus |
| Hsp70Ab-RA | 2375 | CG18743-RA | 255..1852 | 17..1614 | 3235 | 80.2 | Plus |
| Hsp70Aa-RA | 2382 | CG31366-RA | 256..1853 | 17..1614 | 3235 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24055197..24057104 | 1924..17 | 9540 | 100 | Minus |
| 3R | 32079331 | 3R | 11954692..11956289 | 1614..17 | 3235 | 80.2 | Minus |
| 3R | 32079331 | 3R | 11958789..11960386 | 17..1614 | 3235 | 80.2 | Plus |
| 3R | 32079331 | 3R | 12506035..12507632 | 17..1614 | 3145 | 79.8 | Plus |
| 3R | 32079331 | 3R | 12502752..12504349 | 17..1614 | 3130 | 79.7 | Plus |
| 3R | 32079331 | 3R | 12509318..12510915 | 17..1614 | 3130 | 79.7 | Plus |
| 3R | 32079331 | 3R | 12465960..12467557 | 1614..17 | 3100 | 79.6 | Minus |
| 3R | 32079331 | 3R | 15244379..15245934 | 27..1585 | 1940 | 75.1 | Plus |
| 3R | 32079331 | 3R | 13045581..13046988 | 178..1585 | 1640 | 74.4 | Plus |
| 3L | 28110227 | 3L | 13975916..13977280 | 212..1579 | 805 | 70.8 | Plus |
| 3R | 32079331 | 3R | 13044970..13045131 | 23..184 | 375 | 82.1 | Plus |
| X | 23542271 | X | 11802928..11803573 | 1597..946 | 375 | 70.9 | Minus |
| 2R | 25286936 | 2R | 14254844..14255025 | 567..386 | 370 | 80.2 | Minus |
| 3L | 28110227 | 3L | 13974583..13974765 | 20..202 | 345 | 79.2 | Plus |
| X | 23542271 | X | 11803874..11804160 | 642..353 | 335 | 75.2 | Minus |
| 3R | 32079331 | 3R | 12465735..12465829 | 1836..1742 | 205 | 81.1 | Minus |
| 2R | 25286936 | 2R | 14253752..14253851 | 1500..1401 | 200 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:56:32 has no hits.
BS12207.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:40:34 Download gff for
BS12207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 195..2111 | 7..1924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:17 Download gff for
BS12207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 207..2112 | 17..1922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:50 Download gff for
BS12207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 204..2109 | 17..1922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:38 Download gff for
BS12207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 207..2112 | 17..1922 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:38 Download gff for
BS12207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24055199..24057104 | 17..1922 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:17 Download gff for
BS12207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19880921..19882826 | 17..1922 | 100 | | Minus |
BS12207.pep Sequence
Translation from 16 to 1923
> BS12207.pep
MPAIGIDLGTTYSCVGVFQYGKVEIIANDQGNRTTPSYVAFTDSERLIGD
AAKNQVAMNPKNSVFDAKRLIGRRFDDSKIQEDIKHWPFKVINDNGKPKI
SVEFKGANKCFSPEEISSMVLTKMKETAEAYLGTTVKDAVITVPAYFNDS
QRQATKDAGAIAGINVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGG
TFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVNHFAEEFKRKYKKD
LRSNPRALRRLRTAAERAKRTLSSSTEASLEIDALYEGHDFYSKVSRARF
EELCGDLFRNTLEPVEKALKDAKMDKSQIHDIVLVGGSTRIPKVQNLLQN
FFGGKTLNLSINPDEAVAYGAAIQAAILSGDKSSEIKDVLLVDVAPLSLG
IETAGGVMTKLIERNSRIPCKQSKTFTTYADNQPAVTIQVFEGERALTKD
NNVLGTFDLTGVPPAPRGVPKIDVTFDLDANGILNVTAKEQGTGNAKNIT
IKNDKGRLSQADIDRMLSEAEKYAEEDERHRQRIAARNQLETYLFGVKEA
AENGGDRISAADKSSIVERCSEAMKWLDSNTTAEKEEYEYKLKELEQFCS
PIMTKMHKGGGDGQQAPNFGQQAGGYKGPTVEEVD*
BS12207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp68-PA | 635 | CG5436-PA | 1..635 | 1..635 | 3242 | 100 | Plus |
| Hsp70Ab-PA | 642 | CG18743-PA | 1..642 | 1..635 | 2731 | 81.9 | Plus |
| Hsp70Aa-PA | 642 | CG31366-PA | 1..642 | 1..635 | 2731 | 81.9 | Plus |
| Hsp70Bc-PA | 641 | CG6489-PA | 1..641 | 1..635 | 2724 | 81.7 | Plus |
| Hsp70Bb-PA | 641 | CG31359-PA | 1..641 | 1..635 | 2724 | 81.7 | Plus |
