BS12208.complete Sequence
1061 bp assembled on 2006-11-01
GenBank Submission: FJ637096
> BS12208.complete
GAAGTTATCAGTCGACATGGTGTTGCCCCAACTGATTCTTCTATTCGTCG
TTTTGATCAACGATGTCCACGGCATCCTGCCACCTTCTGGCTACGACGAC
GATACATCGCCACTGCCACTCCGCCTTGACGACTTGGAACGGGACCACCT
GCAGCAGTTGGACCTCAATCGGCCGCCACTTCTGCCCAATCACTACGAAT
GGCACCCGGATGTGGCCGCCAGTCTGCCGCCCAGCTACATTCAGGAGGCC
GCCCAACGGGATCGGGAGCGCGAGCGTGATCTCGAGCGTAATCGGCGACT
GGAGGAGCTGCGTCAGCTGCAGCAGCAGCATCAGCAGCTGAGTTCGGGCT
ACGCCTTTCCTGCCCACCTGCCAGGTGTGCTCTATGTTGGTCCCACAGCT
GCCACGCCCACTCCCACGCCCTCGGCAGCGACGACGAAAGTGGCCTCTTC
TGCAACTCCATTTGCCAATCCCATAGTTCCCTACGACTTGGAACTGGGGC
TGCGCCCCATTCCATATGTAACCAGTAATGCCCTGCCCCTTCCAGTGCCA
CGCCCCCTTCCGCCACCCCATGCCCGAGCGCCGTTCATCTACGGATTTAC
CGCCCAGGGCAACCGAGCAACCAGCCACAAGCTGCCGGGTCAGCCCCTGC
TGGTCCAGCAGTCCAAACAGTTCGCCTACGCTCCCGCTCAGCCCCCCCAG
CGGCACTACGCGAATGGGCCACGGGTTCCGATACCGTATCCCCCAAGCTT
TGTGAGCTTCACCACTCGGAGACCGGGTTCGGAGCGTATCAGGCCATTCC
GGCCATCGCAACCGGATCCCACGCCCGATTTGTTTGCTGGACGCTCCTCG
AAATCATTGATCGACTCGTACATTCCCAGCTGGGAGGTACTGCGCCTGAT
CAGACAGCACCAGCCGCAGCAAGGATTCACGCCCATCGCACGCCAAACAC
TCGCGTATCCCGCTCCGGCGCACTTGAGGCTCTACAAGCGAGATTCCCAG
GAGGACCGGTCGAGAATCGTCAAGGAAACCTTACCCGAACCTTAGAAGCT
TTCTAGACCAT
BS12208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-RA | 1029 | CG14626-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-RA | 1413 | CG14626-RA | 307..1337 | 16..1046 | 5155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1187851..1188509 | 388..1046 | 3295 | 100 | Plus |
| X | 23542271 | X | 1186758..1187126 | 19..387 | 1845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 19:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6865 | 285..337 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2384 | 303..340 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2373 | 291..338 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6817 | 254..340 | 111 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6827 | 254..338 | 110 | 58.8 | Plus |
BS12208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:15 Download gff for
BS12208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 1..1029 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:16 Download gff for
BS12208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 295..1340 | 8..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:23 Download gff for
BS12208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 308..1336 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:15 Download gff for
BS12208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 295..1340 | 8..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:20 Download gff for
BS12208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 308..1336 | 17..1045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:20 Download gff for
BS12208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1186757..1187126 | 17..387 | 99 | -> | Plus |
| X | 1187851..1188508 | 388..1045 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:23 Download gff for
BS12208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1080790..1081159 | 17..387 | 99 | -> | Plus |
| arm_X | 1081884..1082541 | 388..1045 | 100 | | Plus |
BS12208.pep Sequence
Translation from 16 to 1044
> BS12208.pep
MVLPQLILLFVVLINDVHGILPPSGYDDDTSPLPLRLDDLERDHLQQLDL
NRPPLLPNHYEWHPDVAASLPPSYIQEAAQRDRERERDLERNRRLEELRQ
LQQQHQQLSSGYAFPAHLPGVLYVGPTAATPTPTPSAATTKVASSATPFA
NPIVPYDLELGLRPIPYVTSNALPLPVPRPLPPPHARAPFIYGFTAQGNR
ATSHKLPGQPLLVQQSKQFAYAPAQPPQRHYANGPRVPIPYPPSFVSFTT
RRPGSERIRPFRPSQPDPTPDLFAGRSSKSLIDSYIPSWEVLRLIRQHQP
QQGFTPIARQTLAYPAPAHLRLYKRDSQEDRSRIVKETLPEP*
BS12208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-PA | 342 | CG14626-PA | 1..342 | 1..342 | 1818 | 100 | Plus |
