BS12212.complete Sequence
953 bp assembled on 2006-11-01
GenBank Submission: FJ637098
> BS12212.complete
GAAGTTATCAGTCGACATGACCCAAGTGAAATCTGTACTTTGCGTGGGTT
GCACGGTGATTGACTTCGTGACCATCAATGGGAGCTATCCTATGGAGGAC
ACCGATCGGCGATGCCTGGATGGGTTCTGGCAACGTGGCGGAAACGCCTC
TAATGTGAGTACTGTGCTCCGGGTTCTTGGATGCAAGGTGGACTTCTTTG
GAATGCTCAGCAGGTCGGATGGATTCCGAGTGCTTCTCGACGATCTCTCG
AAGCGGGAAATCGGCACGAATGACTGTCCCTTCACGGACAGGGATCCGCC
ATTCTCCTCTGTGATCCTGGCTCAGGATTCCGGCACCCGCACCATTATCC
ACTGCAATAAGGACTACCCGCAGACCACCTATGAGGACTTCAGCAAGATA
AACCTTTCGCAGTATGGATGGGTACACTTCGAGGCTCGCAACACGCCGCA
CACCTTAAAGATGATGCAAAGCATCCGGGAGTACAACCAAAGGACCGGAC
AAGGCATCATTATCTCGTTGGACTTCGAAACGAGGTATGAACAAAACCAG
GAATTGTGTGCGCCCTGCGATTTTGTGGTCTTCTCCAAGGAGCTGGCTGG
TCAGTTGGGTTGGAAGACACCGCGGCAGTCGTGCGAGGAGTTGGCCTCCA
AAATTCCCGAAGGTGGTCCAAAGCCTGTCTTCATTTGTCCCTGGGGAAGC
GCCGGAGCTGGAGCTATGGATGCTAATGGAAACTACTATGAAATGTCGTC
CTATAAACAGGACAAGGTAGTTGACACGCTGGGAGCCGGGGACAGTTTCA
TGGCGGGATTCATCTACGCCACCCTCAAGGCTCGTCGAAGTCTAGCGGAG
GCTGTTGACTTTGCCAACCGAGTTGCCAGTCACAAAATCACTGGATTCGG
CTACGAACACATTTCCCAGCTTAGCTTAACCAAGTAAAAGCTTTCTAGAC
CAT
BS12212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-RA | 921 | CG7328-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-RA | 1398 | CG7328-RA | 325..1246 | 17..938 | 4610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20139362..20140283 | 938..17 | 4610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:33:31 has no hits.
BS12212.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:59 Download gff for
BS12212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:58 Download gff for
BS12212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 214..1148 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:57 Download gff for
BS12212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 325..1243 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:59 Download gff for
BS12212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 214..1148 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:58 Download gff for
BS12212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 325..1243 | 17..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:58 Download gff for
BS12212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20139365..20140283 | 17..935 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:57 Download gff for
BS12212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20132465..20133383 | 17..935 | 100 | | Minus |
BS12212.pep Sequence
Translation from 16 to 936
> BS12212.pep
MTQVKSVLCVGCTVIDFVTINGSYPMEDTDRRCLDGFWQRGGNASNVSTV
LRVLGCKVDFFGMLSRSDGFRVLLDDLSKREIGTNDCPFTDRDPPFSSVI
LAQDSGTRTIIHCNKDYPQTTYEDFSKINLSQYGWVHFEARNTPHTLKMM
QSIREYNQRTGQGIIISLDFETRYEQNQELCAPCDFVVFSKELAGQLGWK
TPRQSCEELASKIPEGGPKPVFICPWGSAGAGAMDANGNYYEMSSYKQDK
VVDTLGAGDSFMAGFIYATLKARRSLAEAVDFANRVASHKITGFGYEHIS
QLSLTK*
BS12212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-PA | 306 | CG7328-PA | 1..306 | 1..306 | 1632 | 100 | Plus |
| CG7551-PB | 322 | CG7551-PB | 15..318 | 5..304 | 660 | 42.1 | Plus |
| CG12289-PA | 378 | CG12289-PA | 10..316 | 4..304 | 633 | 42 | Plus |
| CG7335-PA | 372 | CG7335-PA | 31..357 | 5..297 | 348 | 27.5 | Plus |
