BS12214.complete Sequence
1589 bp assembled on 2006-11-01
GenBank Submission: FJ637099
> BS12214.complete
GAAGTTATCAGTCGACATGGCGTTGACAATTACAAAATTTCGAACTTCGA
GGGGGATGGTGGTGGCCGTACAGCCCACAGTGGTGTTGAGCCCCAAAATA
CCAGATTCCCAGGATAACGAAAAGAAACCGTTTTCAAAATCGGAGCCGGG
AAATGCAACTGTGAGAGTTAATGCAGGTGGTATAGTTCTTAACAAAATAC
CAGCGATTATAAGGCCAAGTATGAAGAGAGCAGCAACAACAAAGATGACT
GGAGCCACGGCTGCGGGAGCAACAACAACAACATCGTCAACAGGTGCAGT
GGGATATCCCGTTCTCAAAACACCCAAGTATGTGGTTCAGACTAGTCCGA
GTGGATCCTCTGGCCATCAGCTCCAGATGCTGGCGAGGAAGGACACTCAA
AGTCTGGGAGTGGCCATCAATTCACTGCCGCCCAACACAATCATCAAAGC
AACCACAAGACCTTCACAAACAGCGCCTTTGACACCAAACTCAGCGGCTG
TCACGCCAAGCACGCCGAGCAGTAGCAGGAATTCCACTCAGTCCACACCA
ACTGTGGTACCTGATGCGAGAGTTTCCTCCGCCGTGCGCCAAGCTGTGTT
CATCAAGAGGGAGCTACCCCAGCCGCAGAGGAGCATGCGAAATATGACAC
TTGGTTTGGTGGAACAGGCGCCACTGCTTCATTTGGGTGTTGCGCCACAG
CACCTGTCACTGCTGAAACGCCATATCTGCCGCAATGCTAATGTCACCCA
CTTGGACTGTTGCTTGACTCTAAGGAAACTCAAACAAAACGAGCACTTCG
CCCTGTTGGCCGAGCACTTTGAGCTGAGCGAATCAGATGTCGAGGACACA
TTTAAGCGCACCCTTATCAAGCTGGCCCGTTACCTCCGTCCACTGATTCG
TTGGCCAGATGCACGGCATCACAACGAGCGCTTCAAACATACCCCACTGA
ACTACCGAGCCAACCTGTTGCATGTACGCTCGTTGATCGAGTGTGTGGAA
ACGGACGTGCCGATAGATCTGGGATTGGGCAGCGGCAGCTATAAGTTCAT
ATTGTGCATCAATACAAATGGCATCATCAGCTATGTGTCTAGCGCCTTTC
CTGGTAGTTGCGATGATCTTCAATTGTTTGAGGCCAGCAGATTTCGGGAT
GTCATTCCCAATTACCTAACACTATGCGCGGAACCAGGCAAAGCAGTACG
CCGTGCTCGCAGGTCGGGCTTCGGAGATCCTCACGACTCAGCGGATGAGG
ATGAGGCGGCGGCGGAACCAAAGCGATCACTTACCAAATTCGAGGCACAG
CGTTTGAGTGGCCAGCTAGCAAGCCAGCAATCCCTATCCGTTGTAGACGG
AGCACTGACTTCCAAGCGGGCTCCAGCGATTCAACTACCCACATTCAACG
CACAAGAACCCGCCTGTAGAGCCCAAATGAGAGATATGATAGATTATTTA
AGGGAATTCCGCATGCTGGATAATTCGGCTATTAAGCAAAAGTCATTGCT
GGGTTATCTTGATGAAATGATCGTGGTGGCTGCGGGTCTATGCAACCTTA
AGCGCCAAGAGTTGGAATCTTAAAAGCTTTCTAGACCAT
BS12214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6568-RA | 1557 | CG6568-PA | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG6568-RB | 1353 | CG6568-PB | 1..1353 | 221..1573 | 6765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6568-RA | 1813 | CG6568-RA | 80..1637 | 17..1574 | 7790 | 100 | Plus |
| CG6568-RB | 1721 | CG6568-RB | 94..1545 | 123..1574 | 7260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17406036..17406801 | 1071..306 | 3830 | 100 | Minus |
| 2R | 25286936 | 2R | 17405480..17405984 | 1574..1070 | 2525 | 100 | Minus |
| 2R | 25286936 | 2R | 17406875..17407057 | 305..123 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 17407241..17407348 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2000..2073 | 216..289 | 145 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2930..3006 | 227..300 | 144 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2446 | 229..298 | 143 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1479..1587 | 191..297 | 142 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6817 | 229..299 | 137 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6790 | 229..293 | 134 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6835 | 229..299 | 130 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1141 | 229..299 | 130 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2484 | 227..291 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2510 | 194..299 | 125 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2395 | 229..292 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2419 | 229..298 | 116 | 62.9 | Plus |
BS12214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:00 Download gff for
BS12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 1..1557 | 17..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:00 Download gff for
BS12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 78..1635 | 17..1574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:27 Download gff for
BS12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 80..1634 | 17..1571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:00 Download gff for
BS12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 78..1635 | 17..1574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:28 Download gff for
BS12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 80..1634 | 17..1571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:28 Download gff for
BS12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17405483..17405983 | 1071..1571 | 100 | <- | Minus |
| 2R | 17406037..17406801 | 306..1070 | 100 | <- | Minus |
| 2R | 17406875..17407055 | 125..305 | 100 | <- | Minus |
| 2R | 17407241..17407348 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:27 Download gff for
BS12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13292988..13293488 | 1071..1571 | 100 | <- | Minus |
| arm_2R | 13293542..13294306 | 306..1070 | 100 | <- | Minus |
| arm_2R | 13294380..13294560 | 125..305 | 100 | <- | Minus |
| arm_2R | 13294746..13294853 | 17..124 | 100 | | Minus |
BS12214.pep Sequence
Translation from 16 to 1572
> BS12214.pep
MALTITKFRTSRGMVVAVQPTVVLSPKIPDSQDNEKKPFSKSEPGNATVR
VNAGGIVLNKIPAIIRPSMKRAATTKMTGATAAGATTTTSSTGAVGYPVL
KTPKYVVQTSPSGSSGHQLQMLARKDTQSLGVAINSLPPNTIIKATTRPS
QTAPLTPNSAAVTPSTPSSSRNSTQSTPTVVPDARVSSAVRQAVFIKREL
PQPQRSMRNMTLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCL
TLRKLKQNEHFALLAEHFELSESDVEDTFKRTLIKLARYLRPLIRWPDAR
HHNERFKHTPLNYRANLLHVRSLIECVETDVPIDLGLGSGSYKFILCINT
NGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPGKAVRRARRS
GFGDPHDSADEDEAAAEPKRSLTKFEAQRLSGQLASQQSLSVVDGALTSK
RAPAIQLPTFNAQEPACRAQMRDMIDYLREFRMLDNSAIKQKSLLGYLDE
MIVVAAGLCNLKRQELES*
BS12214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6568-PA | 518 | CG6568-PA | 1..518 | 1..518 | 2632 | 100 | Plus |
| CG6568-PB | 450 | CG6568-PB | 1..450 | 69..518 | 2294 | 100 | Plus |
