Clone BS12218 Report

Search the DGRC for BS12218

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG14352-RA
Protein status:BS12218.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12218.complete Sequence

788 bp assembled on 2006-11-01

GenBank Submission: FJ637101

> BS12218.complete
GAAGTTATCAGTCGACATGTTTGCGGCTAAGCGAGTAAGGGCCCGTGCGA
AGAACTTCACCATTGAGGAGGAGGAGATCCTGGAGAACCTGATCCTGGCG
CATCGCGACGTGATCCGCAACAAGCAGAAGGATCCGGCCATTTGGAGGAA
GAAATCGGAGGCGTGGAAGCAAATTGAGGCGGACTTCGCCATTCAGACCG
GAATAGAGCGTTCTTGGCAGGCTCTGCGAGAGAAGTACACCAACAACCTG
CGGATGATGCGAAAGAACGGAACACTGAGTGACGAGGAGGCAAAGACTGA
CAATGCATCAGATTCGGTGCAGAATTTGTCCATTTCGGGAGTTTCTTCGC
TGGCTGCAGCTGCTGATAATGAAGAAAGTAGTACCTATTTCGAATCGGAA
TTGAACCGAAAAAGCCTCAGAAGCGCCTCTACCGAAGTCAAGCTCGTGCC
GAATAACTCAAGCTACTCAGTTGACAGACCAAACTACTCAGCTCTGAATG
TAAATGAAGAGTCAGTCGATGTGAGCTCAGAAGAGGATGCCACGAATACC
CTGAAGGATGAAAAAGTCGTTCTGATCAGGCTGCAACAGGAGTACTATCG
ATGCGAAAACGCCCGGGCAGCCGAGAAGCACAAGCTTGAGATGGAGAAGC
AGAAATACGAGCTGGAGCAGCGAAAGGTGGAGCTGCGCAATATGCGCCTG
AAAAACGAACTTCTCGAAGCGGAAATACTCGAAAAACGACGCAAAGTCGC
GCAAAGCAAGGCTTCATCCTAAAAGCTTTCTAGACCAT

BS12218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14352-RA 756 CG14352-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14352-RA 1030 CG14352-RA 99..854 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1612006..1612400 378..772 1975 100 Plus
2L 23513712 2L 1611508..1611870 17..379 1815 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:51:59 has no hits.

BS12218.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:03 Download gff for BS12218.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..756 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:03 Download gff for BS12218.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 88..849 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:56 Download gff for BS12218.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 105..852 23..770 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:03 Download gff for BS12218.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 88..849 17..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:31 Download gff for BS12218.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 105..852 23..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:31 Download gff for BS12218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1611514..1611868 23..377 100 -> Plus
2L 1612006..1612398 378..770 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:56 Download gff for BS12218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1611514..1611868 23..377 100 -> Plus
arm_2L 1612006..1612398 378..770 100   Plus

BS12218.pep Sequence

Translation from 16 to 771

> BS12218.pep
MFAAKRVRARAKNFTIEEEEILENLILAHRDVIRNKQKDPAIWRKKSEAW
KQIEADFAIQTGIERSWQALREKYTNNLRMMRKNGTLSDEEAKTDNASDS
VQNLSISGVSSLAAAADNEESSTYFESELNRKSLRSASTEVKLVPNNSSY
SVDRPNYSALNVNEESVDVSSEEDATNTLKDEKVVLIRLQQEYYRCENAR
AAEKHKLEMEKQKYELEQRKVELRNMRLKNELLEAEILEKRRKVAQSKAS
S*

BS12218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14352-PA 251 CG14352-PA 1..251 1..251 1243 100 Plus