BS12220.complete Sequence
1058 bp assembled on 2006-11-01
GenBank Submission: FJ637102
> BS12220.complete
GAAGTTATCAGTCGACATGGCGAACACTTATTTCGATGAGTATGAAAACT
TGGAGATCCACGAGCTCATGCTGAAGGATCGTCCTCGGCAAGAAGCCTAC
TACAATGCGATATTGGGGAATAAGGATCTGTTCAAGGACAAGATCGTAAT
GGATGTTGGTGCCGGCACAGGGATTCTGTCCGCCTTTTGTGCGAAAGCAG
GAGCCCGTTTGGTCTACGCCGTAGAAGCATCCAATGTGGCCACCAAAGTT
GCGCTGGATTTGATTGAGGATAACGGCCTGACGAACGTGGTGAAGGTGAT
CCAGTCGCGTGTTGAGGAATTCGTACTGCCTGCCGAGGCGGAAAAGGTGG
ACATCATTGTGTCCGAGTGGATGGGCTTCTACCTGCTGCACGAGGGCATG
TTGGACTCGGTTCTCCTGGCCCGGGACAAGTTCCTCAAGGAGGGTGGACT
CCTGTTCCCCAGCGAGTGCACAATTTTCGTGGCACCCTGCTCGGTACCAT
CGCTCTTCGATGATTGGCACAACGTGGACGGCATCAAAATGGACACGTTT
GCCAGAAAACTCAGAACCCAAAAGTCATCCCGACCGGAGATTACACAGCT
GAATCCGCAAGATCTTCTGCACGAGGGCGTCGTCTTTCACTGGATGAATC
TGCTGGATGTGGAAGCCAGCGATTTGGACAGCATTCAGTTCAAGGAGGTA
ATAACAGCCCAGAAGGCGGGCAATCACCAGGGCTTCTGCATTTGGTTCGA
TGTACAGTTTCCTGGCGAAGATTTTGTTCTAAGCACATCGCCGCTATCCC
CGCCAACGCATTGGAAGCAGTGTGTAGTCGTCCTGCCCGAGGAATCCTGC
GAAAATCTGGAGGAGAAGTCACCCATTGCATTTCAAATCACAATGAAGCG
CAGTGCTGCCGATATGCGTAAATACAATCTGGAGGTGGATTTGCTAGACC
CCAACACAGAGGAGCATCCAGTGCCTTGCTCCTGTCACATGACGAAGTGC
ATTCTGACGGAAGCTCATCTAAAAATGATGGACACCTCATGAAAGCTTTC
TAGACCAT
BS12220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art8-RA | 1026 | CG16840-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art8-RA | 1210 | CG16840-RA | 94..1120 | 16..1042 | 5135 | 100 | Plus |
| Nup154-RD | 5420 | CG4579-RD | 4410..5398 | 1042..54 | 4945 | 100 | Minus |
| Nup154-RC | 4612 | CG4579-RC | 4343..4612 | 1042..773 | 1350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11009911..11010899 | 1042..54 | 4945 | 100 | Minus |
| 2L | 23513712 | 2L | 11010954..11010993 | 55..16 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:54:54 has no hits.
BS12220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:04 Download gff for
BS12220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:04 Download gff for
BS12220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 93..1122 | 16..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:44:38 Download gff for
BS12220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 95..1119 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:06 Download gff for
BS12220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 93..1122 | 16..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:04 Download gff for
BS12220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 95..1119 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:04 Download gff for
BS12220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11009912..11010897 | 56..1041 | 100 | <- | Minus |
| 2L | 11010954..11010992 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:44:38 Download gff for
BS12220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11009912..11010897 | 56..1041 | 100 | <- | Minus |
| arm_2L | 11010954..11010992 | 17..55 | 100 | | Minus |
BS12220.pep Sequence
Translation from 16 to 1041
> BS12220.pep
MANTYFDEYENLEIHELMLKDRPRQEAYYNAILGNKDLFKDKIVMDVGAG
TGILSAFCAKAGARLVYAVEASNVATKVALDLIEDNGLTNVVKVIQSRVE
EFVLPAEAEKVDIIVSEWMGFYLLHEGMLDSVLLARDKFLKEGGLLFPSE
CTIFVAPCSVPSLFDDWHNVDGIKMDTFARKLRTQKSSRPEITQLNPQDL
LHEGVVFHWMNLLDVEASDLDSIQFKEVITAQKAGNHQGFCIWFDVQFPG
EDFVLSTSPLSPPTHWKQCVVVLPEESCENLEEKSPIAFQITMKRSAADM
RKYNLEVDLLDPNTEEHPVPCSCHMTKCILTEAHLKMMDTS*
BS12220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art8-PA | 341 | CG16840-PA | 1..341 | 1..341 | 1792 | 100 | Plus |
| Art1-PA | 376 | CG6554-PA | 56..358 | 5..309 | 459 | 36.3 | Plus |
| Art6-PA | 341 | CG9927-PA | 19..322 | 5..309 | 448 | 38.1 | Plus |
| Art4-PB | 530 | CG5358-PB | 141..418 | 2..274 | 409 | 37.3 | Plus |
| Art4-PA | 530 | CG5358-PA | 141..418 | 2..274 | 409 | 37.3 | Plus |
