BS12222.complete Sequence
1913 bp assembled on 2009-12-07
GenBank Submission: KX804122
> BS12222.complete
GAAGTTATCAGTCGACATGCAGTCCACACAGATCTCACAGCTCTTCCTGC
TGCTGCACTTGCTCATCTTCACGACCGTTGCTCGTGGCGATGTCAATCGA
CTGGTGCTGGATCAGCTCAACCAGGTGGGATTGGTCAATCTCATAGAGCA
GGCAACGCGACCGAATGTACCCAGAGATCTATCCAACTATGATTTTATTG
TGATTGGAGCTGGAGCAGCTGGTTGCACATTGGCCGCCCGCCTCTCGGAG
AATCCCCAGGTCTCGGTGGCCCTCATCGAAGCTGGTGGAGTGGAGAACAT
AGCGCATCTGACGCCAGTGGTGGCTGGTTATCTGCAGCAGACATCCTCGA
ACTGGGGCTACAAGTCGGTGCCGCAGAAGCTATCCTGCCACGGTATGAAC
AATAACGAGTGTGCCCTGCCGAGGGGCAAGATTCTGGGTGGCACCAGCTC
GATCAACTACATGATCTACAATCGGGGCAATCGTAGGGATTTTGATGCCT
GGGCGGCAGCTGGAAATCCCGGCTGGAGTTACGACGAGGTGTTGCCCTAT
TTTCTGCGAAGTGAGCATGCGCAGCTTCAGGGATTGGAGCAATCGCCATA
TCACAATCACAGTGGTCCCTTGAGTGTGGAATATGTTCGTTTTCGATCGC
AGATGGTGGATGCCTTTGTGGAGGCATCCGTAGAATCGGGTCTGCCGCGC
ACGGACTACAATGGCGAGTCCCAGCTTGGAGTCTCATATGTCCAGGCCAA
TACACTAAATGGACGCAGGCACTCTGCCTACTCGGCGTATATAAAACCAG
TGCGGGATTTGCGCTCCAACTTGCAAATATTCACCTTTTCGCAAGTGACC
CGCATTCTGATCGATGAGGCTACGAAATCCGCTTACGGAGTGGAGTTTCA
TTACAAAAACAAGGCGTATACCTTCAAGGCGAGAAAGGAGGTTATTCTAT
CGGCAGGCAGTTTCAACTCTCCACAGCTACTTATGCTGTCGGGGATTGGA
CCAGAAGATAACCTGCGCGGCATTGGGATACCCCTGATCAAGGCACTGCC
AGTGGGTAAGAGAATGTTCGATCACATGTGCCACTTTGGACCCACTTTTG
TGACCAACACCACGGGCCAAACGACCTTCACATCGAGGGTCACTCCAGCT
GAGTTGATATCATTCCTACTGGCCGGAAATCCAGCCACACGCATGAGTTC
CATTGGCGGCGTCGAGGCTTTGGCATTCCTAAAGACCCAGCGATCGAATC
TGCCAAATGATTGGCCAGATATCGAATTGATCATGGTCACCGGCAGTTTG
GCTAGTGACGAAGGCACTGGTCTGAAACTGGGTGCGAATTTCAAGGACGA
AATATATGATAGAATGTACAGGGAACTGGCGCAGGCGCAACAGGATCACT
TTACCCTGCTGATCATGCAGTTCCATCCGAAGTCAGTGGGTCGCCTCTGG
TTAAAGGATCGCAATCCATTGGGCTGGCCCAAAATCGATCCCAAGTACTT
TGTGGCCGAAGAGGACGTGGAATATCTGTTGGACGGCATCAAAGCCAGTT
TAAGGATCATAGAAATGCCCGCCATGCAAAGGATTGGCGCTAGATTGCTA
AAGCGAACTGTCCCAGGATGCGAGGGTCACCAATTTGCCTCGGATGATTA
TTGGCGTTGCTCCATACGCACGCTATCCTACACACTGCACCACCAGGTGG
CCACCTGTCGCATGGGCGCCGAAAGTGATCCCACCACCGTGGTCAATCAT
CAGCTAAAGGTGCATGGAGTGAGGAAACTTCGGGTGGTGGACACCAGTAT
CATACCATTTCCACCCACCGCTCACACAAATGCAGCGGCATTTATGATTG
GGGAAAAGGCGGCTGATATGATACGAACCGACTGGGAGTTGATCTAGAAG
CTTTCTAGACCAT
BS12222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12539-RA | 1881 | CG12539-PA | 1..1881 | 17..1897 | 9405 | 100 | Plus |
| CG9522-RA | 1851 | CG9522-PA | 1250..1845 | 1290..1885 | 1225 | 80.4 | Plus |
| CG9522-RA | 1851 | CG9522-PA | 148..593 | 185..630 | 1180 | 84.3 | Plus |
| CG9522-RA | 1851 | CG9522-PA | 907..1082 | 944..1119 | 640 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12539-RA | 2085 | CG12539-RA | 26..1906 | 17..1897 | 9405 | 100 | Plus |
| CG9522-RA | 2191 | CG9522-RA | 1280..1875 | 1290..1885 | 1225 | 80.4 | Plus |
| CG9522-RA | 2191 | CG9522-RA | 178..623 | 185..630 | 1180 | 84.3 | Plus |
| CG9522-RA | 2191 | CG9522-RA | 937..1112 | 944..1119 | 640 | 90.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14842796..14844526 | 1897..167 | 8655 | 100 | Minus |
| X | 23542271 | X | 14846788..14847383 | 1885..1290 | 1225 | 80.4 | Minus |
| X | 23542271 | X | 14848040..14848485 | 630..185 | 1180 | 84.3 | Minus |
| X | 23542271 | X | 14844582..14844732 | 167..17 | 755 | 100 | Minus |
| X | 23542271 | X | 14847551..14847726 | 1119..944 | 640 | 90.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:07:08 has no hits.
BS12222.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:49 Download gff for
BS12222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12539-RA | 109..1989 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:21 Download gff for
BS12222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12539-RA | 26..1906 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:31 Download gff for
BS12222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12539-RA | 109..1989 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:22 Download gff for
BS12222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12539-RA | 26..1906 | 17..1897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:22 Download gff for
BS12222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14842796..14844525 | 168..1897 | 100 | <- | Minus |
| X | 14844582..14844732 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:21 Download gff for
BS12222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14736829..14738558 | 168..1897 | 100 | <- | Minus |
| arm_X | 14738615..14738765 | 17..167 | 100 | | Minus |
BS12222.pep Sequence
Translation from 16 to 1896
> BS12222.pep
MQSTQISQLFLLLHLLIFTTVARGDVNRLVLDQLNQVGLVNLIEQATRPN
VPRDLSNYDFIVIGAGAAGCTLAARLSENPQVSVALIEAGGVENIAHLTP
VVAGYLQQTSSNWGYKSVPQKLSCHGMNNNECALPRGKILGGTSSINYMI
YNRGNRRDFDAWAAAGNPGWSYDEVLPYFLRSEHAQLQGLEQSPYHNHSG
PLSVEYVRFRSQMVDAFVEASVESGLPRTDYNGESQLGVSYVQANTLNGR
RHSAYSAYIKPVRDLRSNLQIFTFSQVTRILIDEATKSAYGVEFHYKNKA
YTFKARKEVILSAGSFNSPQLLMLSGIGPEDNLRGIGIPLIKALPVGKRM
FDHMCHFGPTFVTNTTGQTTFTSRVTPAELISFLLAGNPATRMSSIGGVE
ALAFLKTQRSNLPNDWPDIELIMVTGSLASDEGTGLKLGANFKDEIYDRM
YRELAQAQQDHFTLLIMQFHPKSVGRLWLKDRNPLGWPKIDPKYFVAEED
VEYLLDGIKASLRIIEMPAMQRIGARLLKRTVPGCEGHQFASDDYWRCSI
RTLSYTLHHQVATCRMGAESDPTTVVNHQLKVHGVRKLRVVDTSIIPFPP
TAHTNAAAFMIGEKAADMIRTDWELI*
BS12222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12539-PA | 626 | CG12539-PA | 1..626 | 1..626 | 3263 | 100 | Plus |
| CG9522-PA | 616 | CG9522-PA | 10..615 | 9..623 | 2282 | 71.4 | Plus |
| CG6142-PA | 616 | CG6142-PA | 39..609 | 49..625 | 1262 | 44.1 | Plus |
| CG9519-PA | 622 | CG9519-PA | 33..622 | 39..626 | 1227 | 43.1 | Plus |
| CG9521-PA | 621 | CG9521-PA | 58..616 | 56..622 | 1203 | 43.2 | Plus |
