BS12226.complete Sequence
422 bp assembled on 2006-11-01
GenBank Submission: FJ637104
> BS12226.complete
GAAGTTATCAGTCGACATGGCCGCCCCAGCACCAGCACTCAAGGATCTGC
CCAAGGTGGCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGAC
AAACTGAAGAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGA
AGATGTGGCTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCG
CTTTCAATCAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCG
TTGCCCGATAAGGAAGCCATCGAGCAGGAGAAGGAGAAGAATCAGTTCAT
CGCCGGCATCGAGAACTTTGATGCGAAAAAGTTGAAGCACACCGAGACCA
ATGAGAAGAACGTGCTGCCCACCAAGGAGGTGATCGAGGCCGAGAAGCAG
GCTTAAAAGCTTTCTAGACCAT
BS12226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RE | 390 | CG4944-PE | 1..390 | 17..406 | 1950 | 100 | Plus |
cib-RD | 390 | CG4944-PD | 1..390 | 17..406 | 1950 | 100 | Plus |
cib-RB | 390 | CG4944-PB | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RE | 911 | CG4944-RE | 177..568 | 17..408 | 1960 | 100 | Plus |
cib-RD | 1502 | CG4944-RD | 423..814 | 17..408 | 1960 | 100 | Plus |
cib-RB | 1173 | CG4944-RB | 94..485 | 17..408 | 1960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4110150..4110293 | 265..408 | 720 | 100 | Plus |
X | 23542271 | X | 4109689..4109824 | 17..152 | 680 | 100 | Plus |
X | 23542271 | X | 4109895..4110010 | 151..266 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:10 has no hits.
BS12226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:27:34 Download gff for
BS12226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:10 Download gff for
BS12226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..485 | 17..408 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:06 Download gff for
BS12226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..481 | 17..404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:27:34 Download gff for
BS12226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..485 | 17..408 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:06 Download gff for
BS12226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..481 | 17..404 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:06 Download gff for
BS12226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4109689..4109824 | 17..152 | 100 | -> | Plus |
X | 4109897..4110010 | 153..266 | 100 | -> | Plus |
X | 4110152..4110289 | 267..404 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:06 Download gff for
BS12226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4003722..4003857 | 17..152 | 100 | -> | Plus |
arm_X | 4003930..4004043 | 153..266 | 100 | -> | Plus |
arm_X | 4004185..4004322 | 267..404 | 100 | | Plus |
BS12226.pep Sequence
Translation from 16 to 405
> BS12226.pep
MAAPAPALKDLPKVAENLKSQLEGFNQDKLKNASTQEKIILPTAEDVAAE
KTQQSIFEGITAFNQNNLKHTETNEKNPLPDKEAIEQEKEKNQFIAGIEN
FDAKKLKHTETNEKNVLPTKEVIEAEKQA*
BS12226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-PE | 129 | CG4944-PE | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PD | 129 | CG4944-PD | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PB | 129 | CG4944-PB | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PA | 129 | CG4944-PA | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PC | 97 | CG4944-PC | 1..88 | 1..88 | 422 | 95.5 | Plus |