Clone BS12226 Report

Search the DGRC for BS12226

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptcib-RA
Protein status:BS12226.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12226.complete Sequence

422 bp assembled on 2006-11-01

GenBank Submission: FJ637104

> BS12226.complete
GAAGTTATCAGTCGACATGGCCGCCCCAGCACCAGCACTCAAGGATCTGC
CCAAGGTGGCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGAC
AAACTGAAGAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGA
AGATGTGGCTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCG
CTTTCAATCAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCG
TTGCCCGATAAGGAAGCCATCGAGCAGGAGAAGGAGAAGAATCAGTTCAT
CGCCGGCATCGAGAACTTTGATGCGAAAAAGTTGAAGCACACCGAGACCA
ATGAGAAGAACGTGCTGCCCACCAAGGAGGTGATCGAGGCCGAGAAGCAG
GCTTAAAAGCTTTCTAGACCAT

BS12226.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
cib-RE 390 CG4944-PE 1..390 17..406 1950 100 Plus
cib-RD 390 CG4944-PD 1..390 17..406 1950 100 Plus
cib-RB 390 CG4944-PB 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
cib-RE 911 CG4944-RE 177..568 17..408 1960 100 Plus
cib-RD 1502 CG4944-RD 423..814 17..408 1960 100 Plus
cib-RB 1173 CG4944-RB 94..485 17..408 1960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4110150..4110293 265..408 720 100 Plus
X 23542271 X 4109689..4109824 17..152 680 100 Plus
X 23542271 X 4109895..4110010 151..266 580 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:56:10 has no hits.

BS12226.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:27:34 Download gff for BS12226.complete
Subject Subject Range Query Range Percent Splice Strand
cib-RB 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:10 Download gff for BS12226.complete
Subject Subject Range Query Range Percent Splice Strand
cib-RB 94..485 17..408 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:06 Download gff for BS12226.complete
Subject Subject Range Query Range Percent Splice Strand
cib-RB 94..481 17..404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:27:34 Download gff for BS12226.complete
Subject Subject Range Query Range Percent Splice Strand
cib-RB 94..485 17..408 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:06 Download gff for BS12226.complete
Subject Subject Range Query Range Percent Splice Strand
cib-RB 94..481 17..404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:06 Download gff for BS12226.complete
Subject Subject Range Query Range Percent Splice Strand
X 4109689..4109824 17..152 100 -> Plus
X 4109897..4110010 153..266 100 -> Plus
X 4110152..4110289 267..404 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:06 Download gff for BS12226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4003722..4003857 17..152 100 -> Plus
arm_X 4003930..4004043 153..266 100 -> Plus
arm_X 4004185..4004322 267..404 100   Plus

BS12226.pep Sequence

Translation from 16 to 405

> BS12226.pep
MAAPAPALKDLPKVAENLKSQLEGFNQDKLKNASTQEKIILPTAEDVAAE
KTQQSIFEGITAFNQNNLKHTETNEKNPLPDKEAIEQEKEKNQFIAGIEN
FDAKKLKHTETNEKNVLPTKEVIEAEKQA*

BS12226.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
cib-PE 129 CG4944-PE 1..129 1..129 650 100 Plus
cib-PD 129 CG4944-PD 1..129 1..129 650 100 Plus
cib-PB 129 CG4944-PB 1..129 1..129 650 100 Plus
cib-PA 129 CG4944-PA 1..129 1..129 650 100 Plus
cib-PC 97 CG4944-PC 1..88 1..88 422 95.5 Plus