BS12227.complete Sequence
1646 bp assembled on 2006-11-01
GenBank Submission: FJ637105
> BS12227.complete
GAAGTTATCAGTCGACATGTGGGATTCGTCCATGTTTCTCAGCACTCTGA
CGCCTAAGTTCTACGTGGCGCTCACAGGGACCTCCAGCCTGATCTCGGGC
CTGATCCTGATCTTTGAGTGGTGGTATTTCCGGAAGTATGGCACTTCGTT
TATAGAGCAAGTCTCTATCAACCACATTAGCCCCTGGATAAATGGCAGCG
ATGGCCAATCAGAGTCCAGCAATGGCAGTGGCAGCAGCAGCAGCAGTGGC
TCCAGCAGCAGCAGCAATGGCGGAGCAGGCGGAGGAGGATCGGGTGGAGC
AGGGGCATCAGGCAGTGGCAGCGCCACCACAAGTACGGGCACCCAAATGC
CCGAGTGTAAGGTCTGGCGAAATCCACTTAATCTATTTCGCGGCGCCGAG
TACCAGAGATTCTTTTGGGCCACCAGCAAGGAGCCGTTGACCTACTACGA
CATGAACTTAAGTGCCCAGGACCATCAAACATTTTTTACCTGCGAAGGCG
ATGCCCGCAAGGAGGAGTATGAGATCATGCAGACGGCCTGGCGCGAACGC
AATCCCATGCAGCGCATCAAGTCCGCTCACAGTGCTCTGGAAATCAATGC
GGAATGTGCACCTGCCTATATACTGCTGGCCGAGGAGGAAGCCATGACCA
TTATGGAGGCGGAGAAGATCCTGAAGACGGCCCTAAAGGTCGCCGAGATC
AACTACCGCAAGTCGCAGGCCACCCAACACCAGGGCGCCATTGCGGATGG
CATGCATCGGCGCGACACCAATGTGCTGATCTATATCAAGCGACGGCTTG
CCATGTGCGCCCGCAAGCTGGGCAAGCTGAAGGAGGCGGCTAAAATGTTT
CGCGATCTCACCAAGGAGATACCCTCGATCATGAGCGTACTGAACATTCA
CGAGAATCTAATCGAAACGCTGCTGGAGATGCAGGCCTACGCCGATTGCC
ATGCCATTCTGGCCAAGTACGATGACATCTCGCTGCCGAAATCGGCGACT
ATCTGCTATACAGCTGCTCTGCTGAAGGCGCGCGCCGTAGCCGACAAGTT
TTCGCCAGACATAGCATCCAAGCGAGGTCTAAGTCAAGCTGAAATGAGCG
CCGTTGAGGCCATTCATCGGGCGGTGGAGTTCAATCCGCATGTGCCCAAG
TATCTGCTTGAGACAAAGCGACTTATTCTACCGCCAGAGCACATTTTGAA
GCGCGGCGATTCGGAGGCGTTGGCCTACGCGTTCTTCCATCTGAAGCACT
GGAAGCAGGTGGAGGGCGCCCTGAACCTGCTGCACTGCACCTGGGAGGGC
ACGTTTCGCATGCTGCCGTATCCGCTGGAGCGTGGCCACCTCTTCTATCC
ATATCCAACATGCACAGAGTGCGCGGATCGCGAACTGCTGCCGGCGTTCC
ACGAGGTGTCTGTTTATCCTAAGAAGGAGCTGCCCTTCTTCATCCTGTTC
ACGGCGGGACTGTGCTCCATTACCGCCCTGCTGGCCTTGGCCACCCACCA
GTATCCGGAGCCCATGGGTCATTTGGCACAGACCGTACTTACCTGGATAT
CGTATCCATTTCAGCTGCTCAAGGAGCGTATCGAGGCGTTCTGGCCGTGC
AATCTGCTGCAGCAGTTGTCTCGCGTCTAAAAGCTTTCTAGACCAT
BS12227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3634-RC | 1614 | CG3634-PC | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| CG3634-RB | 1614 | CG3634-PB | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| CG3634-RA | 1614 | CG3634-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3634-RC | 2056 | CG3634-RC | 271..1884 | 17..1630 | 8070 | 100 | Plus |
| CG3634-RB | 2025 | CG3634-RB | 240..1853 | 17..1630 | 8070 | 100 | Plus |
| CG3634-RA | 2315 | CG3634-RA | 271..1884 | 17..1630 | 8070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20807299..20808775 | 1630..154 | 7385 | 100 | Minus |
| 3L | 28110227 | 3L | 20808839..20808977 | 155..17 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:05:44 has no hits.
BS12227.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:52 Download gff for
BS12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3634-RA | 1..1614 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:48 Download gff for
BS12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3634-RA | 261..1883 | 9..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:38 Download gff for
BS12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3634-RA | 271..1882 | 17..1628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:52 Download gff for
BS12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3634-RA | 261..1883 | 9..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:12 Download gff for
BS12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3634-RA | 271..1882 | 17..1628 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:12 Download gff for
BS12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20807301..20808773 | 156..1628 | 100 | <- | Minus |
| 3L | 20808839..20808977 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:38 Download gff for
BS12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20800401..20801873 | 156..1628 | 100 | <- | Minus |
| arm_3L | 20801939..20802077 | 17..155 | 100 | | Minus |
BS12227.pep Sequence
Translation from 16 to 1629
> BS12227.pep
MWDSSMFLSTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVS
INHISPWINGSDGQSESSNGSGSSSSSGSSSSSNGGAGGGGSGGAGASGS
GSATTSTGTQMPECKVWRNPLNLFRGAEYQRFFWATSKEPLTYYDMNLSA
QDHQTFFTCEGDARKEEYEIMQTAWRERNPMQRIKSAHSALEINAECAPA
YILLAEEEAMTIMEAEKILKTALKVAEINYRKSQATQHQGAIADGMHRRD
TNVLIYIKRRLAMCARKLGKLKEAAKMFRDLTKEIPSIMSVLNIHENLIE
TLLEMQAYADCHAILAKYDDISLPKSATICYTAALLKARAVADKFSPDIA
SKRGLSQAEMSAVEAIHRAVEFNPHVPKYLLETKRLILPPEHILKRGDSE
ALAYAFFHLKHWKQVEGALNLLHCTWEGTFRMLPYPLERGHLFYPYPTCT
ECADRELLPAFHEVSVYPKKELPFFILFTAGLCSITALLALATHQYPEPM
GHLAQTVLTWISYPFQLLKERIEAFWPCNLLQQLSRV*
BS12227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3634-PC | 537 | CG3634-PC | 1..537 | 1..537 | 2819 | 100 | Plus |
| CG3634-PB | 537 | CG3634-PB | 1..537 | 1..537 | 2819 | 100 | Plus |
| CG3634-PA | 537 | CG3634-PA | 1..537 | 1..537 | 2819 | 100 | Plus |
