BS12228.complete Sequence
2036 bp assembled on 2009-12-07
GenBank Submission: KX805435
> BS12228.complete
GAAGTTATCAGTCGACATGTCGCCTAAATATCATAATTTCGAGATTGCAC
TGGTCTACTTTCTGCTGCTAATACCATGGCCACCCACGAATGTGATCAGA
ATCCTCTGCTCGCGAGATAACAGCCGACTGGTGCGCAAAATAGTGCGCTC
CAAATGGACTCCCATTCTGGACAAGCATCAGGTGAAGCTGCCGCTGGAGT
GCCCGCTCCATCCGTTCCGGGATGTCTTTGCCCCCCGCCAGGATGCCAAG
CAGAGGGATCGACCTACTCAGTGGACGTGCAGGAAATGTGGCAAGAGCTT
CTACCAGGAGAAGCATCTGGACTTACATTTCGACACACGCCACAAGAGCA
TCATCAATGAGGCGGAGGATGCCGTTTGCCTGGCCGACTTCTGCGACATT
ATGCGGTGTGAGGTATTTGAAACGGAGGACGCATCTAGCCTGAAGTTTGG
TGACCAGCACATTGTCACGGACATCGAGGTCTGGGGCGACTCCCTGGGCC
AGAACTCCGCGTTGGCCAAAGCGAATGCTGCCTACTTGAGCTTAATACCT
AGAACTTCCACATTGGGTGCCTCGCGTGCCGCCAAAGTACAAAATCGTCA
ATTACTTCAAGACAAGCCAAGCCAGGCCAGCAAGCAGAATCAGTCACCGG
CAGGTGAGCGAACACATCCCCAATCCCACCACCATCCCCGAGATCGTGCA
TCCACCACAGCCAATCCCCTTCGCCTAGATCCATCGCCGGAGGACGGGTC
GGCGGCTAGGCCCAGGTCGGCGGGCGAGAAGCTGCTTAACAAGCTTAAGG
AGCTGGGGAAGGCGCACCTAAAGCCGGCAGCGGATCCGGAGGCCAGCAGG
CAGAACGAGACCGGCGAGGAGGAGGACGAAAAGGGGAGTGGACAACCTGA
GGGCAGTGGCCAGTCCGCTGATGAGGTCAAAACGGAGGAGGGATCGGGGG
CTAATGGAAACGGAAACAAGGCCAGAGCCAATTGCAAGCCGGAGGAGTTG
AGTAAGCTGAAGAACCGCTGCGAGATCCTGCTAAGGAGCTGCATCGGGGG
ATTGCTGCTGTCCATGTCGGATCAGGCCTTCAAGGAGATGGAAGATGAAA
TGAACAAGGCGGTGTGCTGGTACTTGACTTGCGATCGATACTGGGAGGAT
GGTCCCTTGGAGCCCCGAGCCTTTCCCTGGGGTCTAATCGTGATCCTGAT
CTTCGTACTCTCCACTGGGATCTGCTTCTGCTACTACATTATCTGGATCC
TGTTCGACTCCGAAGAAACGACAATCAACGCGAACCACTACTACGGCCAG
GGATCCATCGGCGCCGGCGGGAGCATCTACATGCCAGGAGCAGCAGCGGG
TCATCACTACCATGTGGACTATGCCACGCGGCACGACCTCGACCTGGACG
CCGGCGGGATAGCTGGTCAGCAGCAGCAACAGCAGCACCTGCTTCAGGAG
CAGCAGTACTATTACCAACAGCAGCAGCAACAGCAGCAGCAGGCAGCATC
CGTTCGGGACTTGTACCCGGAGCAGGTTCAGTATCATCGCCACAGTCCGC
GGCACTACATCGCCGATCAGCGTCCGGTGGGGCCAACAGTGGGCACGCCC
ACCCAAGGGGCCGTTCGCAGCAGCTCCTCCAACGCCAACACGCCGTTGCA
CCATCGGGTGCAGCATTCGGGACAGCATCCCCACCTGCAACATCGTCACT
CGACGAGCCTGGCCTACCCACAGGACATTTTAGACCGACGCGACTATACA
AGTAGCTCCTCTCGCCAGATTGCCACCAACATAGTGGCTGGATCAGGATC
GGGACAAGGCGCTGGAGCTCCTGGCGATACACAGCGTCACTACAACACGC
ATCCGCGGCCGCTGGAAACGAGGCATCGCCATGTGGGTTCCTCGCAGCAA
TCCCTTCGTGCCTCTGCCTCCACGCACGAGATTGTGCAGCAGGAGGCGGG
TCTGGGTCAGAACGAGCACTACATCTACGTGACCTATCCACCGGACCTCA
AGAAGCGCTACTTCGAGTGAAAGCTTTCTAGACCAT
BS12228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4133-RA | 2004 | CG4133-PA | 1..2004 | 17..2020 | 10020 | 100 | Plus |
| CG4133-RC | 1752 | CG4133-PC | 1..1752 | 17..1755 | 8530 | 99.3 | Plus |
| CG4133-RB | 1929 | CG4133-PB | 636..1929 | 727..2020 | 6470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4133-RA | 2629 | CG4133-RA | 271..2274 | 17..2020 | 10020 | 100 | Plus |
| CG4133-RC | 2642 | CG4133-RC | 271..2287 | 17..2020 | 9855 | 99.4 | Plus |
| CG4133-RB | 2554 | CG4133-RB | 906..2199 | 727..2020 | 6470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 457628..458390 | 1258..2020 | 3815 | 100 | Plus |
| 2L | 23513712 | 2L | 456793..457338 | 549..1094 | 2730 | 100 | Plus |
| 2L | 23513712 | 2L | 456537..456729 | 360..552 | 965 | 100 | Plus |
| 2L | 23513712 | 2L | 456287..456469 | 180..362 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 457398..457562 | 1093..1257 | 825 | 100 | Plus |
| 2L | 23513712 | 2L | 456084..456225 | 42..183 | 710 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1310..1360 | 1069..1019 | 120 | 70.6 | Minus |
BS12228.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:27 Download gff for
BS12228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4133-RA | 259..2261 | 17..2019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:58 Download gff for
BS12228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4133-RA | 271..2273 | 17..2019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:36 Download gff for
BS12228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4133-RA | 259..2261 | 17..2019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:23 Download gff for
BS12228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4133-RA | 271..2273 | 17..2019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:23 Download gff for
BS12228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 456797..457338 | 553..1094 | 100 | -> | Plus |
| 2L | 455801..455827 | 17..43 | 100 | -> | Plus |
| 2L | 456086..456223 | 44..181 | 100 | -> | Plus |
| 2L | 456289..456468 | 182..361 | 100 | -> | Plus |
| 2L | 456539..456729 | 362..552 | 100 | -> | Plus |
| 2L | 457400..457562 | 1095..1257 | 100 | -> | Plus |
| 2L | 457628..458389 | 1258..2019 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:58 Download gff for
BS12228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 456797..457338 | 553..1094 | 100 | -> | Plus |
| arm_2L | 455801..455827 | 17..43 | 100 | -> | Plus |
| arm_2L | 456086..456223 | 44..181 | 100 | -> | Plus |
| arm_2L | 456289..456468 | 182..361 | 100 | -> | Plus |
| arm_2L | 456539..456729 | 362..552 | 100 | -> | Plus |
| arm_2L | 457400..457562 | 1095..1257 | 100 | -> | Plus |
| arm_2L | 457628..458389 | 1258..2019 | 100 | | Plus |
BS12228.pep Sequence
Translation from 16 to 2019
> BS12228.pep
MSPKYHNFEIALVYFLLLIPWPPTNVIRILCSRDNSRLVRKIVRSKWTPI
LDKHQVKLPLECPLHPFRDVFAPRQDAKQRDRPTQWTCRKCGKSFYQEKH
LDLHFDTRHKSIINEAEDAVCLADFCDIMRCEVFETEDASSLKFGDQHIV
TDIEVWGDSLGQNSALAKANAAYLSLIPRTSTLGASRAAKVQNRQLLQDK
PSQASKQNQSPAGERTHPQSHHHPRDRASTTANPLRLDPSPEDGSAARPR
SAGEKLLNKLKELGKAHLKPAADPEASRQNETGEEEDEKGSGQPEGSGQS
ADEVKTEEGSGANGNGNKARANCKPEELSKLKNRCEILLRSCIGGLLLSM
SDQAFKEMEDEMNKAVCWYLTCDRYWEDGPLEPRAFPWGLIVILIFVLST
GICFCYYIIWILFDSEETTINANHYYGQGSIGAGGSIYMPGAAAGHHYHV
DYATRHDLDLDAGGIAGQQQQQQHLLQEQQYYYQQQQQQQQQAASVRDLY
PEQVQYHRHSPRHYIADQRPVGPTVGTPTQGAVRSSSSNANTPLHHRVQH
SGQHPHLQHRHSTSLAYPQDILDRRDYTSSSSRQIATNIVAGSGSGQGAG
APGDTQRHYNTHPRPLETRHRHVGSSQQSLRASASTHEIVQQEAGLGQNE
HYIYVTYPPDLKKRYFE*
BS12228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4133-PA | 667 | CG4133-PA | 1..667 | 1..667 | 3576 | 100 | Plus |
| CG4133-PB | 642 | CG4133-PB | 1..642 | 1..667 | 3400 | 96.3 | Plus |
| CG4133-PC | 583 | CG4133-PC | 1..414 | 1..414 | 2217 | 100 | Plus |
| dar1-PB | 751 | CG12029-PB | 307..491 | 468..659 | 162 | 31 | Plus |
