BS12229.complete Sequence
1493 bp assembled on 2006-11-01
GenBank Submission: FJ637106
> BS12229.complete
GAAGTTATCAGTCGACATGTTGCGGCAGTGTCTGGTGGGCGTGCTGCTAG
TTATAACTGGTGCTAATGGCCAGGGAAAGGAGAAAGAGGAGTTTCAATGC
CCCTCACACATTGCCAACGGTAACTACGCTGATCCGGCGACCTGTCGTCG
TTTTTACCAGTGCGTCGATGGATATCCGTATTTGAACCGCTGTCCATCCG
GACTTTTCTTCGATGATGTGCAGAAGTTCTGCACTTTCAAGGATGAGGCC
AAGTGCGGTCCTCTACCAACAACGCCTGCCCCTGCCACTGAGGCCCCGGC
AGATACCGCCCAGCGGTGCAACACGGAGAACTGCGCCCTGCCCTATTGCT
TCTGCTCCAAGGACGGCACCCAGATTCCCGGCGACCTGGAGCCCGAAAAA
ATCCCCCAAATTATTATGCTGACCTTCGATGGCGCTGTGAATTTGAACAA
CTACCAGCACTACCAAAAGATATTCGACGGCAAGCGCAAGAATCCCAACG
GCTGTCTGATTCGGGGCACCTTCTTCATGTCGCACGAGTACAGCAACTAC
CAGCAAATCCAGCACCTGGGATACTATGGACACGAAATCGGAACGGAGAG
CATCTCGCAGCAGCAAGGACTGCAGGATAAGGGCTACGAGGAGTGGGTGG
GCGAGATGATTGGCATGCGTGAAATCCTGCGACACTTCGCCAATGTGTCC
GTCAACGATGTGGTCGGCATGCGAGCTCCGTTCCTCAAACCTGGCCGCAA
CACCCAATACAAGGTGCTGGAGGACTTTGGGTACATCTATGACAGCTCGA
TCACCGTTCCACCGGTACCCGTGCCAGTGTGGCCGTACACCCTCGATTAC
AAGATCTCGCACGAGTGCAAGAGCGGCACCTGTCCGTCGCGCACTTTCCC
CGGCGTTTGGGAGGTTCCCCTGAACACACACTACGTGGAGGGCTATGAGG
GCGGTCACTGTCCCTATCTCGACCAGTGCGTCTTGCACAACCTAGACGAG
GAGGAGGTCTTTCAGTGGCTACAGGAGGACTTTTCGCGCTACTACGAACA
GAACAAGGCTCCATACATGATGCCCTTCCACACTAACTGGTTCCAGACCA
AGCCGCTGGAGAACGGCCTCCACAAATTCCTTGACTGGGCCCTCGAACTA
CCTGACGTCTACATCCTGACCGTTACCCAGATGCTCCAGTACGTGACCGA
CCCAAAGGAGCTTCGCGATGTCAGCCAAATTGAGTCGTGGAAGTGCGACA
AGAGCGTGTCTGTAGCCCCCAAGCCCTGCAATATCTGGCAGACGTGTGCG
CTGCCCTTCAAGATTCCCGAACAGAATCTGACGGATACGCGCTATATGGA
GACCTGTCGGGAATGCCCTAATGTGTATCCCTGGCTGGGCGATGCAGGCG
GTACGGGAATCGCGGGTCGCGATAACTATATCTTTGCCGGTGGCGAAAAT
CCAGAGGAAGAAGACTCTGCGAAGTAGAAGCTTTCTAGACCAT
BS12229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-RA | 1461 | CG32499-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| verm-RG | 1578 | CG8756-PG | 475..693 | 332..550 | 270 | 74.9 | Plus |
| verm-RI | 1668 | CG8756-PI | 565..783 | 332..550 | 270 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-RA | 1934 | CG32499-RA | 147..1610 | 17..1480 | 7320 | 100 | Plus |
| verm-RG | 2165 | CG8756-RG | 589..807 | 332..550 | 270 | 74.9 | Plus |
| verm-RI | 2255 | CG8756-RI | 679..897 | 332..550 | 270 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22588465..22588856 | 1149..758 | 1945 | 99.7 | Minus |
| X | 23542271 | X | 22583958..22584288 | 1480..1150 | 1655 | 100 | Minus |
| X | 23542271 | X | 22590660..22590885 | 766..541 | 1130 | 100 | Minus |
| X | 23542271 | X | 22605246..22605388 | 543..401 | 715 | 100 | Minus |
| X | 23542271 | X | 22610802..22610929 | 400..273 | 640 | 100 | Minus |
| X | 23542271 | X | 22619624..22619739 | 272..157 | 580 | 100 | Minus |
| X | 23542271 | X | 22619823..22619915 | 160..68 | 465 | 100 | Minus |
| 3L | 28110227 | 3L | 19691391..19691609 | 550..332 | 270 | 74.9 | Minus |
| X | 23542271 | X | 22632512..22632564 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:24:40 has no hits.
BS12229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:53 Download gff for
BS12229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-RA | 1..1461 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:32 Download gff for
BS12229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-RA | 151..1606 | 22..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:52 Download gff for
BS12229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 152..1607 | 22..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:53 Download gff for
BS12229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-RA | 141..1609 | 12..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:34 Download gff for
BS12229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 152..1607 | 22..1477 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:34 Download gff for
BS12229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22610802..22610929 | 273..400 | 100 | <- | Minus |
| X | 22619624..22619735 | 161..272 | 100 | <- | Minus |
| X | 22619823..22619914 | 69..160 | 100 | <- | Minus |
| X | 22632513..22632559 | 22..68 | 100 | | Minus |
| X | 22590663..22590882 | 544..763 | 100 | <- | Minus |
| X | 22605246..22605388 | 401..543 | 100 | <- | Minus |
| X | 22583961..22584288 | 1150..1477 | 100 | <- | Minus |
| X | 22588465..22588850 | 764..1149 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:52 Download gff for
BS12229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21985797..21986124 | 1150..1477 | 100 | <- | Minus |
| arm_X | 21990301..21990686 | 764..1149 | 100 | <- | Minus |
| arm_X | 21992499..21992718 | 544..763 | 100 | <- | Minus |
| arm_X | 22007082..22007224 | 401..543 | 100 | <- | Minus |
| arm_X | 22012638..22012765 | 273..400 | 100 | <- | Minus |
| arm_X | 22021460..22021571 | 161..272 | 100 | <- | Minus |
| arm_X | 22021659..22021750 | 69..160 | 100 | <- | Minus |
| arm_X | 22034349..22034395 | 22..68 | 100 | | Minus |
BS12229.pep Sequence
Translation from 16 to 1476
> BS12229.pep
MLRQCLVGVLLVITGANGQGKEKEEFQCPSHIANGNYADPATCRRFYQCV
DGYPYLNRCPSGLFFDDVQKFCTFKDEAKCGPLPTTPAPATEAPADTAQR
CNTENCALPYCFCSKDGTQIPGDLEPEKIPQIIMLTFDGAVNLNNYQHYQ
KIFDGKRKNPNGCLIRGTFFMSHEYSNYQQIQHLGYYGHEIGTESISQQQ
GLQDKGYEEWVGEMIGMREILRHFANVSVNDVVGMRAPFLKPGRNTQYKV
LEDFGYIYDSSITVPPVPVPVWPYTLDYKISHECKSGTCPSRTFPGVWEV
PLNTHYVEGYEGGHCPYLDQCVLHNLDEEEVFQWLQEDFSRYYEQNKAPY
MMPFHTNWFQTKPLENGLHKFLDWALELPDVYILTVTQMLQYVTDPKELR
DVSQIESWKCDKSVSVAPKPCNIWQTCALPFKIPEQNLTDTRYMETCREC
PNVYPWLGDAGGTGIAGRDNYIFAGGENPEEEDSAK*
BS12229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-PA | 486 | CG32499-PA | 1..486 | 1..486 | 2720 | 100 | Plus |
| ChLD3-PA | 577 | CG17905-PA | 111..575 | 43..462 | 823 | 35.9 | Plus |
| Cda5-PH | 891 | CG31973-PH | 492..876 | 60..461 | 770 | 40.3 | Plus |
| Cda5-PA | 1039 | CG31973-PA | 640..1024 | 60..461 | 770 | 40.3 | Plus |
| verm-PG | 525 | CG8756-PG | 50..524 | 43..466 | 748 | 34.2 | Plus |
