BS12230.complete Sequence
1046 bp assembled on 2006-11-01
GenBank Submission: FJ637107
> BS12230.complete
GAAGTTATCAGTCGACATGAGAGTGTTCATAGCTCTAGCGGCTTTGTTGG
CAACAGTAAGTGCTCTTCCCATTGAGGAACGTGTCAATGGTGAAAATGGT
TGGTATGTGCCTCAGATAGACGGCAGTTTCGAGTGGATGGACAAACAGGA
TGCCGAGGAGCTCTTAAATAGAAATTCACTCATCGAAACACGTTCCAATG
ACGTGTCCTTTTACCTGTACACCAAACATAACCCAACCGTGGGAAAGGAA
ATCAGGGCTGATGCTTCATCAATCGAAGACTCTCATTTCGATAAGAACCA
GGGTACTCGTTTCGTAATCCACGGGTGGAATGGTCGCTACACTGATGGCA
TGAACGTCAAGATCACCCGAGCCTGGCTTTCGAAGGGAGACTACAACGTG
ATCGTTGTTAACTGGGATCGTGCCCAGTCCGTGGACTATATCTCATCGGT
GCGAGCTGTTCCTGGAGCTGGAGCCAAAGTGGGAGAAATGATTGAATATC
TGCATGAACACCATCATTTGTCCATGGAGAGCCTGGAAGTAATCGGACAC
AGTTTGGGTGCCCATGTGGCTGGCTATGCTGGAAAGCAGGTGGGCGGCAA
AAGGGTTCACACGATTGTCGGTCTGGATCCTGCCATGCCTCTTTTTGCCT
ACGATAAGCCTGACAAGCGACTGTCCACCGAAGATGCCTTCTATGTCGAG
TCTATTCAGACCAATGGGGGTGAAAAGGGTTTCCTAAAACCCATTGGCAA
AGGCACTTTCTATCCGAATGGAGGAAGAAATCAACCAGGTTGCGGTTCAG
ACATCGGAGGAACCTGCGCCCACGGACGATCCGTAACGTATTACGTGGAG
GCAGTCACTGAGGATAACTTTGGAACGATCAAGTGTCACGACTACCAGGC
TGCGTTGGCCAACGAGTGCGGAAGCACCTACAGTGGAGTTCGCATGGGAG
CTGTTACCAACGCCTACATGGTCGACGGTGACTTCTATGTGCCCGTAAAC
GGACAGGCCCCCTTCGGAAAGATCGAATAGAAGCTTTCTAGACCAT
BS12230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-RA | 1014 | CG17191-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
| CG17192-RA | 1014 | CG17192-PA | 45..1001 | 61..1017 | 1440 | 76.7 | Plus |
| CG6283-RA | 1020 | CG6283-PA | 361..1020 | 371..1030 | 915 | 75.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-RA | 1090 | CG17191-RA | 25..1039 | 17..1031 | 5075 | 100 | Plus |
| CG17192-RA | 1052 | CG17192-RA | 50..1006 | 61..1017 | 1440 | 76.7 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 386..1047 | 371..1032 | 925 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27018659..27019635 | 1031..55 | 4885 | 100 | Minus |
| 3R | 32079331 | 3R | 27017226..27018182 | 1017..61 | 1440 | 76.7 | Minus |
| 3R | 32079331 | 3R | 27020274..27020935 | 1032..371 | 925 | 76 | Minus |
| 3R | 32079331 | 3R | 27025006..27025472 | 1017..548 | 560 | 75.1 | Minus |
| 3R | 32079331 | 3R | 27022113..27022579 | 1017..548 | 515 | 74.5 | Minus |
| 3R | 32079331 | 3R | 27021153..27021257 | 159..55 | 210 | 80 | Minus |
| 3R | 32079331 | 3R | 27019688..27019727 | 56..17 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 27025581..27025637 | 439..383 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:34:17 has no hits.
BS12230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:54 Download gff for
BS12230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 1..1014 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:52 Download gff for
BS12230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..1039 | 7..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:18 Download gff for
BS12230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 25..1038 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:54 Download gff for
BS12230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..1039 | 7..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:18 Download gff for
BS12230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 25..1038 | 17..1030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:18 Download gff for
BS12230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27018660..27019633 | 57..1030 | 100 | <- | Minus |
| 3R | 27019688..27019727 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:18 Download gff for
BS12230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22844382..22845355 | 57..1030 | 100 | <- | Minus |
| arm_3R | 22845410..22845449 | 17..56 | 100 | | Minus |
BS12230.pep Sequence
Translation from 16 to 1029
> BS12230.pep
MRVFIALAALLATVSALPIEERVNGENGWYVPQIDGSFEWMDKQDAEELL
NRNSLIETRSNDVSFYLYTKHNPTVGKEIRADASSIEDSHFDKNQGTRFV
IHGWNGRYTDGMNVKITRAWLSKGDYNVIVVNWDRAQSVDYISSVRAVPG
AGAKVGEMIEYLHEHHHLSMESLEVIGHSLGAHVAGYAGKQVGGKRVHTI
VGLDPAMPLFAYDKPDKRLSTEDAFYVESIQTNGGEKGFLKPIGKGTFYP
NGGRNQPGCGSDIGGTCAHGRSVTYYVEAVTEDNFGTIKCHDYQAALANE
CGSTYSGVRMGAVTNAYMVDGDFYVPVNGQAPFGKIE*
BS12230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-PA | 337 | CG17191-PA | 1..337 | 1..337 | 1800 | 100 | Plus |
| CG6283-PA | 339 | CG6283-PA | 1..339 | 1..337 | 1399 | 75.5 | Plus |
| CG17192-PA | 337 | CG17192-PA | 1..337 | 1..337 | 1358 | 73.9 | Plus |
| CG6277-PA | 341 | CG6277-PA | 1..340 | 1..336 | 1128 | 62.5 | Plus |
| CG6271-PA | 341 | CG6271-PA | 1..340 | 1..336 | 1107 | 62.5 | Plus |
