Clone BS12233 Report

Search the DGRC for BS12233

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG18294-RA
Protein status:BS12233.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12233.complete Sequence

458 bp assembled on 2006-11-01

GenBank Submission: FJ637108

> BS12233.complete
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCCGCTCCTGT
GGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGTTGTGGCCAAGT
ACGCTGCTGCTCCATTGGCCCACATTTCCTCCTTGGCTTACACCTCGCCT
TTGGCATACAGTGCCTTGCCATCAGCTCCTGTTCTTCTTTAGAAGCTTTC
TAGACCAT

BS12233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-RA 426 CG18294-PA 1..426 17..442 2130 100 Plus
CG12519-RB 396 CG12519-PB 1..308 17..324 1480 98.7 Plus
CG12519-RA 396 CG12519-PA 1..308 17..324 1480 98.7 Plus
CG18294-RA 426 CG18294-PA 225..314 280..369 375 94.4 Plus
CG18294-RA 426 CG18294-PA 264..353 241..330 375 94.4 Plus
CG12519-RB 396 CG12519-PB 225..308 280..363 315 91.7 Plus
CG18294-RA 426 CG18294-PA 225..276 319..370 185 90.4 Plus
CG18294-RA 426 CG18294-PA 303..354 241..292 185 90.4 Plus
CG12519-RB 396 CG12519-PB 225..275 319..369 180 90.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-RA 507 CG18294-RA 55..482 17..444 2140 100 Plus
CG12519-RB 600 CG12519-RB 53..360 17..324 1480 98.7 Plus
CG12519-RA 507 CG12519-RA 53..360 17..324 1480 98.7 Plus
CG18294-RA 507 CG18294-RA 279..368 280..369 375 94.4 Plus
CG18294-RA 507 CG18294-RA 318..407 241..330 375 94.4 Plus
CG12519-RB 600 CG12519-RB 277..360 280..363 315 91.7 Plus
CG18294-RA 507 CG18294-RA 279..330 319..370 185 90.4 Plus
CG18294-RA 507 CG18294-RA 357..408 241..292 185 90.4 Plus
CG12519-RB 600 CG12519-RB 277..327 319..369 180 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19475042..19475457 444..29 2080 100 Minus
3L 28110227 3L 19472610..19472905 29..324 1420 98.6 Plus
3L 28110227 3L 19466699..19466962 292..29 1260 98.5 Minus
3L 28110227 3L 19471808..19472096 333..39 745 84.4 Minus
3L 28110227 3L 19475971..19476259 39..333 745 84.4 Plus
3L 28110227 3L 19478373..19478568 49..244 740 91.8 Plus
3L 28110227 3L 19423849..19424044 49..244 725 91.3 Plus
3L 28110227 3L 19467481..19467687 39..263 700 88.4 Plus
3L 28110227 3L 19488045..19488279 49..292 615 84.4 Plus
3L 28110227 3L 19475156..19475245 369..280 375 94.4 Minus
3L 28110227 3L 19475117..19475206 330..241 375 94.4 Minus
3L 28110227 3L 19423125..19423224 246..147 320 88 Minus
3L 28110227 3L 19472822..19472905 280..363 315 91.7 Plus
3L 28110227 3L 19424757..19424836 159..238 310 92.5 Plus
3L 28110227 3L 19471817..19471903 363..277 255 86.2 Minus
3L 28110227 3L 19476164..19476250 277..363 255 86.2 Plus
3L 28110227 3L 19464433..19464518 243..158 220 83.7 Minus
3L 28110227 3L 19475116..19475167 292..241 185 90.4 Minus
3L 28110227 3L 19475194..19475245 370..319 185 90.4 Minus
3L 28110227 3L 19472822..19472872 319..369 180 90.2 Plus
Blast to na_te.dros performed 2014-11-27 20:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 177..102 147 69.7 Minus

BS12233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:57 Download gff for BS12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:55 Download gff for BS12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 45..484 7..449 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:24 Download gff for BS12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 60..480 22..442 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:57 Download gff for BS12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 45..484 7..449 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:04 Download gff for BS12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 60..480 22..442 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:04 Download gff for BS12233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19475044..19475457 29..442 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:24 Download gff for BS12233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19468144..19468557 29..442 100   Minus

BS12233.pep Sequence

Translation from 16 to 441

> BS12233.pep
MFKSAVVILAIVACAAAKPGLLGAPLAYTAPLAYSAPLAYSAPAAVVAAP
APVVTATSSQVIARNYNGIAAAPVIAPVAAPVVAKYAAAPLAAPVVAKYA
AAPLAAPVVAKYAAAPLAHISSLAYTSPLAYSALPSAPVLL*

BS12233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-PA 141 CG18294-PA 1..141 1..141 678 100 Plus
CG12519-PB 131 CG12519-PB 1..131 1..141 560 85.8 Plus
CG12519-PA 131 CG12519-PA 1..131 1..141 560 85.8 Plus
CG14096-PA 122 CG14096-PA 1..122 1..141 486 76.8 Plus
825-Oak-PB 129 CG32208-PB 1..129 1..141 478 75.9 Plus