BS12233.complete Sequence
458 bp assembled on 2006-11-01
GenBank Submission: FJ637108
> BS12233.complete
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCCGCTCCTGT
GGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGTTGTGGCCAAGT
ACGCTGCTGCTCCATTGGCCCACATTTCCTCCTTGGCTTACACCTCGCCT
TTGGCATACAGTGCCTTGCCATCAGCTCCTGTTCTTCTTTAGAAGCTTTC
TAGACCAT
BS12233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18294-RA | 426 | CG18294-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
CG12519-RB | 396 | CG12519-PB | 1..308 | 17..324 | 1480 | 98.7 | Plus |
CG12519-RA | 396 | CG12519-PA | 1..308 | 17..324 | 1480 | 98.7 | Plus |
CG18294-RA | 426 | CG18294-PA | 225..314 | 280..369 | 375 | 94.4 | Plus |
CG18294-RA | 426 | CG18294-PA | 264..353 | 241..330 | 375 | 94.4 | Plus |
CG12519-RB | 396 | CG12519-PB | 225..308 | 280..363 | 315 | 91.7 | Plus |
CG18294-RA | 426 | CG18294-PA | 225..276 | 319..370 | 185 | 90.4 | Plus |
CG18294-RA | 426 | CG18294-PA | 303..354 | 241..292 | 185 | 90.4 | Plus |
CG12519-RB | 396 | CG12519-PB | 225..275 | 319..369 | 180 | 90.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18294-RA | 507 | CG18294-RA | 55..482 | 17..444 | 2140 | 100 | Plus |
CG12519-RB | 600 | CG12519-RB | 53..360 | 17..324 | 1480 | 98.7 | Plus |
CG12519-RA | 507 | CG12519-RA | 53..360 | 17..324 | 1480 | 98.7 | Plus |
CG18294-RA | 507 | CG18294-RA | 279..368 | 280..369 | 375 | 94.4 | Plus |
CG18294-RA | 507 | CG18294-RA | 318..407 | 241..330 | 375 | 94.4 | Plus |
CG12519-RB | 600 | CG12519-RB | 277..360 | 280..363 | 315 | 91.7 | Plus |
CG18294-RA | 507 | CG18294-RA | 279..330 | 319..370 | 185 | 90.4 | Plus |
CG18294-RA | 507 | CG18294-RA | 357..408 | 241..292 | 185 | 90.4 | Plus |
CG12519-RB | 600 | CG12519-RB | 277..327 | 319..369 | 180 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19475042..19475457 | 444..29 | 2080 | 100 | Minus |
3L | 28110227 | 3L | 19472610..19472905 | 29..324 | 1420 | 98.6 | Plus |
3L | 28110227 | 3L | 19466699..19466962 | 292..29 | 1260 | 98.5 | Minus |
3L | 28110227 | 3L | 19471808..19472096 | 333..39 | 745 | 84.4 | Minus |
3L | 28110227 | 3L | 19475971..19476259 | 39..333 | 745 | 84.4 | Plus |
3L | 28110227 | 3L | 19478373..19478568 | 49..244 | 740 | 91.8 | Plus |
3L | 28110227 | 3L | 19423849..19424044 | 49..244 | 725 | 91.3 | Plus |
3L | 28110227 | 3L | 19467481..19467687 | 39..263 | 700 | 88.4 | Plus |
3L | 28110227 | 3L | 19488045..19488279 | 49..292 | 615 | 84.4 | Plus |
3L | 28110227 | 3L | 19475156..19475245 | 369..280 | 375 | 94.4 | Minus |
3L | 28110227 | 3L | 19475117..19475206 | 330..241 | 375 | 94.4 | Minus |
3L | 28110227 | 3L | 19423125..19423224 | 246..147 | 320 | 88 | Minus |
3L | 28110227 | 3L | 19472822..19472905 | 280..363 | 315 | 91.7 | Plus |
3L | 28110227 | 3L | 19424757..19424836 | 159..238 | 310 | 92.5 | Plus |
3L | 28110227 | 3L | 19471817..19471903 | 363..277 | 255 | 86.2 | Minus |
3L | 28110227 | 3L | 19476164..19476250 | 277..363 | 255 | 86.2 | Plus |
3L | 28110227 | 3L | 19464433..19464518 | 243..158 | 220 | 83.7 | Minus |
3L | 28110227 | 3L | 19475116..19475167 | 292..241 | 185 | 90.4 | Minus |
3L | 28110227 | 3L | 19475194..19475245 | 370..319 | 185 | 90.4 | Minus |
3L | 28110227 | 3L | 19472822..19472872 | 319..369 | 180 | 90.2 | Plus |
Blast to na_te.dros performed 2014-11-27 20:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 177..102 | 147 | 69.7 | Minus |
BS12233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:57 Download gff for
BS12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18294-RA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:55 Download gff for
BS12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18294-RA | 45..484 | 7..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:24 Download gff for
BS12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18294-RA | 60..480 | 22..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:57 Download gff for
BS12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18294-RA | 45..484 | 7..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:04 Download gff for
BS12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18294-RA | 60..480 | 22..442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:04 Download gff for
BS12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19475044..19475457 | 29..442 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:24 Download gff for
BS12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19468144..19468557 | 29..442 | 100 | | Minus |
BS12233.pep Sequence
Translation from 16 to 441
> BS12233.pep
MFKSAVVILAIVACAAAKPGLLGAPLAYTAPLAYSAPLAYSAPAAVVAAP
APVVTATSSQVIARNYNGIAAAPVIAPVAAPVVAKYAAAPLAAPVVAKYA
AAPLAAPVVAKYAAAPLAHISSLAYTSPLAYSALPSAPVLL*
BS12233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18294-PA | 141 | CG18294-PA | 1..141 | 1..141 | 678 | 100 | Plus |
CG12519-PB | 131 | CG12519-PB | 1..131 | 1..141 | 560 | 85.8 | Plus |
CG12519-PA | 131 | CG12519-PA | 1..131 | 1..141 | 560 | 85.8 | Plus |
CG14096-PA | 122 | CG14096-PA | 1..122 | 1..141 | 486 | 76.8 | Plus |
825-Oak-PB | 129 | CG32208-PB | 1..129 | 1..141 | 478 | 75.9 | Plus |