BS12237.complete Sequence
1229 bp assembled on 2006-11-01
GenBank Submission: FJ637110
> BS12237.complete
GAAGTTATCAGTCGACATGGCCGCCTGCTACAATGCCTATAGCGCTGGAT
CACAGTCCTTCGAGTTCGACGAGGACGACGACGACGCCTCCTTCGACAGT
GGCTACGAGAAGAGTTTCGAGACGGAGGCCCAGTTGAGCTCACGACGCCG
CTTGGACTTTGGCACTCCGCCGACTCCGGCGATCCCGCAACCGTACTCCG
GCGGCACCTGGGACGCCGTACCGCTCAGCTCACCGCCGGCGGGCTTCGTG
GGATTGCTCGATACGAGCAGCAATCACAGCACTCGGAGCGGCAGGACACT
GGTCGAACATCTGAACAGTCGGGCCACGAATGGCGTCTTCGATCCGCCAT
TGACCAGTACGCCGGTGAAGTCGCCAGAGGATCCCAATGCGCCGCGACCG
AAACGCAAATATGCCGTCGGCAAGAACAGAGTAACTCGCTCGCGCAGTCC
AACCCAAGTGGTGAAGATCAAGCGTTTCCGCCGCATGAAGGCCAATGACC
GGGAGCGGAATCGGATGCATAACTTGAATGATGCCCTGGAGAAACTACGC
GTCACTCTGCCCTCGCTTCCCGAGGAGACGAAGCTGACGAAGATCGAGAT
TCTGCGATTTGCGCACAACTACATCTTTGCCCTGGAGCAGGTGCTGGAAA
GCGGAGGTTCAATCAACCTGGATCTGGAGAAGCTGCAGAACTTCACGCTG
AGTGGTGAGAGGATTACCAAGGAGCTCTTCGATGCTCTTTTCGTGAATCC
ACAGCCGTATCCCTTGTTCGGACGAATGTTCCCCTATGGACAGGGAATGG
CGCCTCTTGCACAGCACCAGACTGCTCCAGCATCGCACGCGGAGCAGCCG
CCGGCGATGGGTGGCTTTCAGCACGGCATGGACTATCCGCAGCAGCCACC
AGGATTCGACTTTACAGGCAGCATGCGGTTTTACCACCAACAGCAACAGC
AGCCGCATCAGCCTCACCATCTGCAGCCTAATCCCCAGCAGGAGTCCAGC
CCGCAGCAGTTCTCGCAGGAGAAATACGATCTGTTCAGGGGATCCTTCGA
TGCAGCTGCCAATCTTCATTCTACGAACTTGGATTCTGGGATTCACCAGC
AGAGCAGCTTCTACTCGCAAACACCGCCATGGAAGGACTATCCGGAGGAT
CAGGCACACGTGCATCCCGTTCCACATCAACACAGCTACAAAAACTTCGC
CCCGCAGGTGTAGAAGCTTTCTAGACCAT
BS12237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tap-RA | 1197 | CG7659-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tap-RA | 2130 | CG7659-RA | 111..1308 | 16..1213 | 5990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17359792..17360989 | 16..1213 | 5990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6835 | 904..1033 | 162 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6856 | 933..994 | 148 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2262..2380 | 874..993 | 146 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6819 | 933..993 | 143 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2431 | 848..990 | 138 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2422 | 933..1026 | 136 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6864 | 878..1029 | 131 | 59.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1146 | 933..990 | 128 | 69 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 966..1029 | 929..994 | 127 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6843 | 933..1026 | 120 | 61.7 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7928..7994 | 911..977 | 119 | 64.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9372..9438 | 911..977 | 119 | 64.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1057..1145 | 883..977 | 118 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6857 | 933..977 | 117 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2389 | 943..1026 | 114 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2414 | 933..994 | 112 | 64.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1122..1163 | 933..974 | 111 | 73.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2465 | 869..1009 | 110 | 59.7 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3265..3336 | 917..989 | 110 | 63 | Plus |
BS12237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:58 Download gff for
BS12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:56 Download gff for
BS12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 143..1348 | 16..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:43 Download gff for
BS12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 112..1308 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:58 Download gff for
BS12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 143..1348 | 16..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:40 Download gff for
BS12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 112..1308 | 17..1213 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:40 Download gff for
BS12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17359793..17360989 | 17..1213 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:43 Download gff for
BS12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17352893..17354089 | 17..1213 | 100 | | Plus |
BS12237.pep Sequence
Translation from 16 to 1212
> BS12237.pep
MAACYNAYSAGSQSFEFDEDDDDASFDSGYEKSFETEAQLSSRRRLDFGT
PPTPAIPQPYSGGTWDAVPLSSPPAGFVGLLDTSSNHSTRSGRTLVEHLN
SRATNGVFDPPLTSTPVKSPEDPNAPRPKRKYAVGKNRVTRSRSPTQVVK
IKRFRRMKANDRERNRMHNLNDALEKLRVTLPSLPEETKLTKIEILRFAH
NYIFALEQVLESGGSINLDLEKLQNFTLSGERITKELFDALFVNPQPYPL
FGRMFPYGQGMAPLAQHQTAPASHAEQPPAMGGFQHGMDYPQQPPGFDFT
GSMRFYHQQQQQPHQPHHLQPNPQQESSPQQFSQEKYDLFRGSFDAAANL
HSTNLDSGIHQQSSFYSQTPPWKDYPEDQAHVHPVPHQHSYKNFAPQV*
BS12237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tap-PA | 398 | CG7659-PA | 1..398 | 1..398 | 2136 | 100 | Plus |
dimm-PB | 390 | CG8667-PB | 108..214 | 91..212 | 156 | 36.9 | Plus |
dimm-PA | 390 | CG8667-PA | 108..214 | 91..212 | 156 | 36.9 | Plus |