Clone BS12237 Report

Search the DGRC for BS12237

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:37
Vector:pDNR-Dual
Associated Gene/Transcripttap-RA
Protein status:BS12237.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12237.complete Sequence

1229 bp assembled on 2006-11-01

GenBank Submission: FJ637110

> BS12237.complete
GAAGTTATCAGTCGACATGGCCGCCTGCTACAATGCCTATAGCGCTGGAT
CACAGTCCTTCGAGTTCGACGAGGACGACGACGACGCCTCCTTCGACAGT
GGCTACGAGAAGAGTTTCGAGACGGAGGCCCAGTTGAGCTCACGACGCCG
CTTGGACTTTGGCACTCCGCCGACTCCGGCGATCCCGCAACCGTACTCCG
GCGGCACCTGGGACGCCGTACCGCTCAGCTCACCGCCGGCGGGCTTCGTG
GGATTGCTCGATACGAGCAGCAATCACAGCACTCGGAGCGGCAGGACACT
GGTCGAACATCTGAACAGTCGGGCCACGAATGGCGTCTTCGATCCGCCAT
TGACCAGTACGCCGGTGAAGTCGCCAGAGGATCCCAATGCGCCGCGACCG
AAACGCAAATATGCCGTCGGCAAGAACAGAGTAACTCGCTCGCGCAGTCC
AACCCAAGTGGTGAAGATCAAGCGTTTCCGCCGCATGAAGGCCAATGACC
GGGAGCGGAATCGGATGCATAACTTGAATGATGCCCTGGAGAAACTACGC
GTCACTCTGCCCTCGCTTCCCGAGGAGACGAAGCTGACGAAGATCGAGAT
TCTGCGATTTGCGCACAACTACATCTTTGCCCTGGAGCAGGTGCTGGAAA
GCGGAGGTTCAATCAACCTGGATCTGGAGAAGCTGCAGAACTTCACGCTG
AGTGGTGAGAGGATTACCAAGGAGCTCTTCGATGCTCTTTTCGTGAATCC
ACAGCCGTATCCCTTGTTCGGACGAATGTTCCCCTATGGACAGGGAATGG
CGCCTCTTGCACAGCACCAGACTGCTCCAGCATCGCACGCGGAGCAGCCG
CCGGCGATGGGTGGCTTTCAGCACGGCATGGACTATCCGCAGCAGCCACC
AGGATTCGACTTTACAGGCAGCATGCGGTTTTACCACCAACAGCAACAGC
AGCCGCATCAGCCTCACCATCTGCAGCCTAATCCCCAGCAGGAGTCCAGC
CCGCAGCAGTTCTCGCAGGAGAAATACGATCTGTTCAGGGGATCCTTCGA
TGCAGCTGCCAATCTTCATTCTACGAACTTGGATTCTGGGATTCACCAGC
AGAGCAGCTTCTACTCGCAAACACCGCCATGGAAGGACTATCCGGAGGAT
CAGGCACACGTGCATCCCGTTCCACATCAACACAGCTACAAAAACTTCGC
CCCGCAGGTGTAGAAGCTTTCTAGACCAT

BS12237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
tap-RA 1197 CG7659-PA 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
tap-RA 2130 CG7659-RA 111..1308 16..1213 5990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17359792..17360989 16..1213 5990 100 Plus
Blast to na_te.dros performed 2014-11-27 14:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6835 904..1033 162 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6856 933..994 148 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2262..2380 874..993 146 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6819 933..993 143 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2431 848..990 138 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2422 933..1026 136 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6716..6864 878..1029 131 59.6 Plus
roo 9092 roo DM_ROO 9092bp 1089..1146 933..990 128 69 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 966..1029 929..994 127 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6843 933..1026 120 61.7 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7928..7994 911..977 119 64.2 Plus
TART-C 11124 TART-C TARTC 11124bp 9372..9438 911..977 119 64.2 Plus
roo 9092 roo DM_ROO 9092bp 1057..1145 883..977 118 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6813..6857 933..977 117 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2389 943..1026 114 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2414 933..994 112 64.5 Plus
roo 9092 roo DM_ROO 9092bp 1122..1163 933..974 111 73.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2465 869..1009 110 59.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3265..3336 917..989 110 63 Plus

BS12237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:58 Download gff for BS12237.complete
Subject Subject Range Query Range Percent Splice Strand
tap-RA 1..1197 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:56 Download gff for BS12237.complete
Subject Subject Range Query Range Percent Splice Strand
tap-RA 143..1348 16..1220 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:43 Download gff for BS12237.complete
Subject Subject Range Query Range Percent Splice Strand
tap-RA 112..1308 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:58 Download gff for BS12237.complete
Subject Subject Range Query Range Percent Splice Strand
tap-RA 143..1348 16..1220 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:40 Download gff for BS12237.complete
Subject Subject Range Query Range Percent Splice Strand
tap-RA 112..1308 17..1213 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:40 Download gff for BS12237.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17359793..17360989 17..1213 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:43 Download gff for BS12237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17352893..17354089 17..1213 100   Plus

BS12237.pep Sequence

Translation from 16 to 1212

> BS12237.pep
MAACYNAYSAGSQSFEFDEDDDDASFDSGYEKSFETEAQLSSRRRLDFGT
PPTPAIPQPYSGGTWDAVPLSSPPAGFVGLLDTSSNHSTRSGRTLVEHLN
SRATNGVFDPPLTSTPVKSPEDPNAPRPKRKYAVGKNRVTRSRSPTQVVK
IKRFRRMKANDRERNRMHNLNDALEKLRVTLPSLPEETKLTKIEILRFAH
NYIFALEQVLESGGSINLDLEKLQNFTLSGERITKELFDALFVNPQPYPL
FGRMFPYGQGMAPLAQHQTAPASHAEQPPAMGGFQHGMDYPQQPPGFDFT
GSMRFYHQQQQQPHQPHHLQPNPQQESSPQQFSQEKYDLFRGSFDAAANL
HSTNLDSGIHQQSSFYSQTPPWKDYPEDQAHVHPVPHQHSYKNFAPQV*

BS12237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
tap-PA 398 CG7659-PA 1..398 1..398 2136 100 Plus
dimm-PB 390 CG8667-PB 108..214 91..212 156 36.9 Plus
dimm-PA 390 CG8667-PA 108..214 91..212 156 36.9 Plus