BS12238.complete Sequence
1196 bp assembled on 2006-11-01
GenBank Submission: FJ637111
> BS12238.complete
GAAGTTATCAGTCGACATGACGAGAAACGCGGCGGTGAGTGGCGATGAAC
CCGACGAGGAGCAGGCGTCAGCGGTAGTCGCTGAAGGTGAGGATCAGGAG
ACTCAAAACCAGGCGATGCAGGATGATGGGCAACCAGGAGGCGAGGGCCA
CCACCTCAGCAGCGAAAAGCAACAATCGACAGAGCAGTGTCGTCAGAGGC
CGCGGAAAAAATTGACGGACAAGCAACCACAACGAAGTGCTGCCAATTCG
CATCCAGAGCAGGCGGATGCGGACACGGACTCCAGCTCCTGCGAAGGCAT
TAAAGTGGGTCAGCGGAGGGGCACGCGGGTGAGCTACGCTCAGAGAAACC
TTCATGGGGCGGAGCTGGAGGACTACGACTACGATGGGGAAGGGGAGGGG
GAGCGGGAGGAAGATGGGGAGGAGGAAGAAGAGGAGGAAGAATCCTACGA
CGACTACGAACAGTCCTCGAAACCGGAGGGACGTCGACCTTCTGCCCGAA
CCGCCTTGAGCGTCCGCAGCAGACGAAAGACGAAAACCCGTCAAATTTGC
TATGCATCCTCGGACTTGGAGCTGGGAATTGGCGACGGACCCAACCTAAT
CGACGGCGAGACCCTGCATAAACGCCGCTGCATCTCCAAGGGACAAATGC
GGGAATTCCGGGAGGCCTTCCGGCTCTTTGACAAGGATGGCGATGGCTGC
ATAACCAAAGAGGAGCTCGGCACAGTGATGCGGTCACTGGGACAATTTGC
CAGAGTAGAAGAGCTGCAGGAGATGTTGCAGGAGATCGACGTGGACGGGG
ACGGGAACGTCAGTTTTGAGGAGTTCGTTGATATCCTGTCAAACATGACG
TACGAGGATAAGTCAGGTCTATCCTCCGCCGATCAGGAGGAGCGGGAACT
ACGCGACGCCTTCCGCGTCTTCGACAAGCACAACCGGGGATACATAACAG
CCTCTGACTTGCGAGCCGTGCTGCAGTGTCTGGGCGAGGATCTCGACGAG
GAGGACATTGAGGACATGATCAAGGAGGTGGACGTGGACGGCGACGGGCG
CATTGACTTCTACGAGTTTGTCCACGCATTGGGAGAACCGGAGGACTCGC
AGGAGAACGACGACGAGGATGTGGACACCACATCGCCGCTGCCCACACCG
AAATCGGCCATTTCCCTAAGCTACGATTGAAAGCTTTCTAGACCAT
BS12238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11638-RA | 1164 | CG11638-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11638-RA | 2462 | CG11638-RA | 376..1539 | 17..1180 | 5820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1015468..1016247 | 798..19 | 3900 | 100 | Minus |
| X | 23542271 | X | 1015140..1015350 | 1007..797 | 1055 | 100 | Minus |
| X | 23542271 | X | 1014907..1015079 | 1180..1008 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:53:19 has no hits.
BS12238.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:42 Download gff for
BS12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11638-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:36 Download gff for
BS12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11638-RA | 370..1543 | 9..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:44 Download gff for
BS12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11638-RA | 376..1538 | 17..1179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:42 Download gff for
BS12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11638-RA | 370..1543 | 9..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:48 Download gff for
BS12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11638-RA | 376..1538 | 17..1179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:48 Download gff for
BS12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1015140..1015349 | 798..1007 | 100 | <- | Minus |
| X | 1014908..1015079 | 1008..1179 | 100 | <- | Minus |
| X | 1015469..1016248 | 17..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:44 Download gff for
BS12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 908941..909112 | 1008..1179 | 100 | <- | Minus |
| arm_X | 909173..909382 | 798..1007 | 100 | <- | Minus |
| arm_X | 909502..910281 | 17..797 | 99 | | Minus |
BS12238.pep Sequence
Translation from 16 to 1179
> BS12238.pep
MTRNAAVSGDEPDEEQASAVVAEGEDQETQNQAMQDDGQPGGEGHHLSSE
KQQSTEQCRQRPRKKLTDKQPQRSAANSHPEQADADTDSSSCEGIKVGQR
RGTRVSYAQRNLHGAELEDYDYDGEGEGEREEDGEEEEEEEESYDDYEQS
SKPEGRRPSARTALSVRSRRKTKTRQICYASSDLELGIGDGPNLIDGETL
HKRRCISKGQMREFREAFRLFDKDGDGCITKEELGTVMRSLGQFARVEEL
QEMLQEIDVDGDGNVSFEEFVDILSNMTYEDKSGLSSADQEERELRDAFR
VFDKHNRGYITASDLRAVLQCLGEDLDEEDIEDMIKEVDVDGDGRIDFYE
FVHALGEPEDSQENDDEDVDTTSPLPTPKSAISLSYD*
BS12238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11638-PA | 387 | CG11638-PA | 1..387 | 1..387 | 2010 | 100 | Plus |
| Cam-PD | 149 | CG8472-PD | 5..143 | 206..352 | 380 | 49.7 | Plus |
| Cam-PC | 149 | CG8472-PC | 5..143 | 206..352 | 380 | 49.7 | Plus |
| Cam-PE | 149 | CG8472-PE | 5..143 | 206..352 | 380 | 49.7 | Plus |
| Cam-PB | 149 | CG8472-PB | 5..143 | 206..352 | 380 | 49.7 | Plus |
| Cam-PD | 149 | CG8472-PD | 59..148 | 190..276 | 183 | 44.4 | Plus |
| Cam-PC | 149 | CG8472-PC | 59..148 | 190..276 | 183 | 44.4 | Plus |
| Cam-PE | 149 | CG8472-PE | 59..148 | 190..276 | 183 | 44.4 | Plus |
| Cam-PD | 149 | CG8472-PD | 7..85 | 289..367 | 156 | 36.7 | Plus |
| Cam-PC | 149 | CG8472-PC | 7..85 | 289..367 | 156 | 36.7 | Plus |
| Cam-PE | 149 | CG8472-PE | 7..85 | 289..367 | 156 | 36.7 | Plus |
