BS12242.complete Sequence
653 bp assembled on 2006-11-01
GenBank Submission: FJ637112
> BS12242.complete
GAAGTTATCAGTCGACATGGCGAGGGCGGCTTTTATTGTGTGCCTACTGA
TGGCCTGTGCCTGGAGCAGCCATGCGGTGATGTTCAAGCTGTCGCCGAAC
ACCCAGAAGTGCCTCAAGGAAGACATCCAGGCGAACCAACTGGTTATGGG
CGAGTTCGAAGTTTCCGACGTACCCGGCCAGATCATCGACTACATTGCAC
GCGACACCAAGGGACACATCCTGTCGCAGAAGGAGCACATCACTAAGGGC
AAGTTCAGCTTCATGTCCGAGGTGTACGATACGTACGAAATCTGCTTTAT
ATCCAAAGTTCCTGCACATCAACGCGGCGTTATACAGGAAGTATCGCTCT
TGACCAAAAAGGGAGTGGAGACCAAGAGCTACGAAGGCATTGGCGAAGCA
TCCAAACTGAAGCCCCTTGAAGTTGATCTTAAGCGTTTGGAGGATCTCTC
CGACTCCATTGTGCGTGATTTCGTTCTCATGCGCAAGCGGGAGGAGGAAA
TGCGCGATACCAATGAGAAAACCAACAGCCGCGTGCTGTTCTTCAGCATC
TTCAGCATGTGCTGCCTGCTCGGCTTGGCGACGTGGCAAGTTCTGTACCT
CCGCAGGTACTTCAAAGCCAAAAAACTCATCGAATAGAAGCTTTCTAGAC
CAT
BS12242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bai-RA | 621 | CG11785-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bai-RA | 807 | CG11785-RA | 77..697 | 17..637 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25039450..25039630 | 17..197 | 905 | 100 | Plus |
3R | 32079331 | 3R | 25040022..25040148 | 389..515 | 635 | 100 | Plus |
3R | 32079331 | 3R | 25040211..25040333 | 515..637 | 615 | 100 | Plus |
3R | 32079331 | 3R | 25039701..25039821 | 197..317 | 605 | 100 | Plus |
3R | 32079331 | 3R | 25039881..25039956 | 313..388 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:09:31 has no hits.
BS12242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:43 Download gff for
BS12242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:37 Download gff for
BS12242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 76..696 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:09 Download gff for
BS12242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 77..697 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:43 Download gff for
BS12242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 76..696 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:40 Download gff for
BS12242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 77..697 | 17..637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:40 Download gff for
BS12242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25039450..25039629 | 17..196 | 100 | -> | Plus |
3R | 25039701..25039821 | 197..317 | 100 | -> | Plus |
3R | 25039886..25039956 | 318..388 | 100 | -> | Plus |
3R | 25040022..25040148 | 389..515 | 100 | -> | Plus |
3R | 25040212..25040333 | 516..637 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:09 Download gff for
BS12242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20865172..20865351 | 17..196 | 100 | -> | Plus |
arm_3R | 20865423..20865543 | 197..317 | 100 | -> | Plus |
arm_3R | 20865608..20865678 | 318..388 | 100 | -> | Plus |
arm_3R | 20865744..20865870 | 389..515 | 100 | -> | Plus |
arm_3R | 20865934..20866055 | 516..637 | 100 | | Plus |
BS12242.pep Sequence
Translation from 16 to 636
> BS12242.pep
MARAAFIVCLLMACAWSSHAVMFKLSPNTQKCLKEDIQANQLVMGEFEVS
DVPGQIIDYIARDTKGHILSQKEHITKGKFSFMSEVYDTYEICFISKVPA
HQRGVIQEVSLLTKKGVETKSYEGIGEASKLKPLEVDLKRLEDLSDSIVR
DFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLGLATWQVLYLRRYFK
AKKLIE*
BS12242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bai-PA | 206 | CG11785-PA | 1..206 | 1..206 | 1054 | 100 | Plus |
eca-PA | 216 | CG33104-PA | 2..216 | 3..205 | 218 | 27.9 | Plus |
CHOp24-PB | 208 | CG3564-PB | 5..208 | 1..205 | 186 | 23.6 | Plus |
CHOp24-PA | 208 | CG3564-PA | 5..208 | 1..205 | 186 | 23.6 | Plus |
p24-2-PB | 244 | CG33105-PB | 2..206 | 3..195 | 179 | 26.3 | Plus |