Clone BS12242 Report

Search the DGRC for BS12242

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:42
Vector:pDNR-Dual
Associated Gene/Transcriptbai-RA
Protein status:BS12242.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12242.complete Sequence

653 bp assembled on 2006-11-01

GenBank Submission: FJ637112

> BS12242.complete
GAAGTTATCAGTCGACATGGCGAGGGCGGCTTTTATTGTGTGCCTACTGA
TGGCCTGTGCCTGGAGCAGCCATGCGGTGATGTTCAAGCTGTCGCCGAAC
ACCCAGAAGTGCCTCAAGGAAGACATCCAGGCGAACCAACTGGTTATGGG
CGAGTTCGAAGTTTCCGACGTACCCGGCCAGATCATCGACTACATTGCAC
GCGACACCAAGGGACACATCCTGTCGCAGAAGGAGCACATCACTAAGGGC
AAGTTCAGCTTCATGTCCGAGGTGTACGATACGTACGAAATCTGCTTTAT
ATCCAAAGTTCCTGCACATCAACGCGGCGTTATACAGGAAGTATCGCTCT
TGACCAAAAAGGGAGTGGAGACCAAGAGCTACGAAGGCATTGGCGAAGCA
TCCAAACTGAAGCCCCTTGAAGTTGATCTTAAGCGTTTGGAGGATCTCTC
CGACTCCATTGTGCGTGATTTCGTTCTCATGCGCAAGCGGGAGGAGGAAA
TGCGCGATACCAATGAGAAAACCAACAGCCGCGTGCTGTTCTTCAGCATC
TTCAGCATGTGCTGCCTGCTCGGCTTGGCGACGTGGCAAGTTCTGTACCT
CCGCAGGTACTTCAAAGCCAAAAAACTCATCGAATAGAAGCTTTCTAGAC
CAT

BS12242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
bai-RA 621 CG11785-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
bai-RA 807 CG11785-RA 77..697 17..637 3105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25039450..25039630 17..197 905 100 Plus
3R 32079331 3R 25040022..25040148 389..515 635 100 Plus
3R 32079331 3R 25040211..25040333 515..637 615 100 Plus
3R 32079331 3R 25039701..25039821 197..317 605 100 Plus
3R 32079331 3R 25039881..25039956 313..388 365 98.7 Plus
Blast to na_te.dros performed on 2014-11-27 14:09:31 has no hits.

BS12242.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:43 Download gff for BS12242.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:37 Download gff for BS12242.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 76..696 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:09 Download gff for BS12242.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 77..697 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:43 Download gff for BS12242.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 76..696 17..637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:40 Download gff for BS12242.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 77..697 17..637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:40 Download gff for BS12242.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25039450..25039629 17..196 100 -> Plus
3R 25039701..25039821 197..317 100 -> Plus
3R 25039886..25039956 318..388 100 -> Plus
3R 25040022..25040148 389..515 100 -> Plus
3R 25040212..25040333 516..637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:09 Download gff for BS12242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20865172..20865351 17..196 100 -> Plus
arm_3R 20865423..20865543 197..317 100 -> Plus
arm_3R 20865608..20865678 318..388 100 -> Plus
arm_3R 20865744..20865870 389..515 100 -> Plus
arm_3R 20865934..20866055 516..637 100   Plus

BS12242.pep Sequence

Translation from 16 to 636

> BS12242.pep
MARAAFIVCLLMACAWSSHAVMFKLSPNTQKCLKEDIQANQLVMGEFEVS
DVPGQIIDYIARDTKGHILSQKEHITKGKFSFMSEVYDTYEICFISKVPA
HQRGVIQEVSLLTKKGVETKSYEGIGEASKLKPLEVDLKRLEDLSDSIVR
DFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLGLATWQVLYLRRYFK
AKKLIE*

BS12242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
bai-PA 206 CG11785-PA 1..206 1..206 1054 100 Plus
eca-PA 216 CG33104-PA 2..216 3..205 218 27.9 Plus
CHOp24-PB 208 CG3564-PB 5..208 1..205 186 23.6 Plus
CHOp24-PA 208 CG3564-PA 5..208 1..205 186 23.6 Plus
p24-2-PB 244 CG33105-PB 2..206 3..195 179 26.3 Plus