Clone BS12245 Report

Search the DGRC for BS12245

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptPbp45-RA
Protein status:BS12245.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12245.complete Sequence

1124 bp assembled on 2006-11-01

GenBank Submission: FJ637114

> BS12245.complete
GAAGTTATCAGTCGACATGGAGCTGAATATCTTTGACGACTGCTGGGAGC
TGGTGCAACGATTTCAGCGATTGGTTAATGATGGCGAAAACTGCGAGTTC
GAGGTGTTCTGCCGGTGCTGGCGAGAACTGCAGCTGCAGCACCTCTTCAC
TGCCCAGACGAACCACACAGAGGTGATAGCCACCACACTGGCGGCCCTGC
ATGTGGCCAAGCGACTGTCGTGCTCCCGACGCACCACCGGGGACGTTTTC
CCGGCATCTCGCGCTCAAAGGATCGGAGGTTTCTTTCTGCTCTACGTAAT
CTACTACAAGCAGCCCACGCACAACTTTATTAAGATCGAGGTCTCACCGC
GCACTTGGCAAGAACTAACAGACTACGCTCTAGATCTGCGCAAGGATAGT
CCGGAGCGGAAGGACACTCATCAGATCGCCTACATGCTGTGGCGCCTGAC
CCAGGAGCAGGCCTTCCGCTTCACCGCGCTCGACTATTGCCAGGGGTTGG
ACAATCTGGTGGACTACGACCGTGTGGAGACCGTAGCGGGTGCCAAGGAA
CAGAGGCAGAGTGCCTTGATGCAGAAGCAACAGCGTGCGAACGGCGTCAG
TCTCACATACGAACTGGAGGGTCTGCGAGCACTGGACCAGGCAAGCCAGC
CATTGTGTGAACTGGAAGCGGCATACAATGCCCAAAAGAAGCAATTGGCG
GCTGGTCATGAGCACGCTTTGCCGCCCTCTCAAATATTCGGCCATTTGCG
AGAAGTCTTTGCCGATATCCAAAGTGTTCTAGGAGCTAGAAAGAGTACTC
CAGATGAGAATTGTACCACAACATCTACAGGCAACCAGTTGGAAGTGCGC
CAGAGGGTGCGGAACAAGGCCATGTACGGCGTCGAGGAACGGGAGCCGCA
AAACCAGGCGGATGAACTAGAAGTGCAGCTGGAGGTCAACGAGACTTATC
AACGCCGCATGTCCTCGGCCACCGTTTTTCAGAGGGAACTTCCAGCAGAC
GTGCAGCAAGAGTATGAGATGATTGAGTTTAGTGACGACGAGGAAATGGA
AGTGGGTGAAAGCGAGGAGGTCACGGAAGAAGAACTCAAAGCTATTTTGG
ATACTTGAAAGCTTTCTAGACCAT

BS12245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp45-RA 1092 CG9597-PA 1..1092 17..1108 5460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp45-RA 1370 CG9597-RA 104..1195 17..1108 5460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15838321..15839412 1108..17 5460 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:03:53 has no hits.

BS12245.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:47 Download gff for BS12245.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1092 17..1108 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:42 Download gff for BS12245.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 48..1154 5..1114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:53 Download gff for BS12245.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 104..1194 17..1107 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:47 Download gff for BS12245.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 48..1154 5..1114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:45 Download gff for BS12245.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 104..1194 17..1107 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:45 Download gff for BS12245.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15838322..15839412 17..1107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:53 Download gff for BS12245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11664044..11665134 17..1107 100   Minus

BS12245.pep Sequence

Translation from 16 to 1107

> BS12245.pep
MELNIFDDCWELVQRFQRLVNDGENCEFEVFCRCWRELQLQHLFTAQTNH
TEVIATTLAALHVAKRLSCSRRTTGDVFPASRAQRIGGFFLLYVIYYKQP
THNFIKIEVSPRTWQELTDYALDLRKDSPERKDTHQIAYMLWRLTQEQAF
RFTALDYCQGLDNLVDYDRVETVAGAKEQRQSALMQKQQRANGVSLTYEL
EGLRALDQASQPLCELEAAYNAQKKQLAAGHEHALPPSQIFGHLREVFAD
IQSVLGARKSTPDENCTTTSTGNQLEVRQRVRNKAMYGVEEREPQNQADE
LEVQLEVNETYQRRMSSATVFQRELPADVQQEYEMIEFSDDEEMEVGESE
EVTEEELKAILDT*

BS12245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp45-PA 363 CG9597-PA 1..363 1..363 1885 100 Plus