BS12246.complete Sequence
1838 bp assembled on 2009-12-07
GenBank Submission: KX806205
> BS12246.complete
GAAGTTATCAGTCGACATGGGAGCGACACCGAAAACAGACTTTCCGGCTC
ACTGGCTGCTGTGTATCCTTCTGGCTCTCGGCTCCTTATCCTCGAAAGCG
AATGCCGTTAGTGCTTATGGCGCCTCCTTCATTTCGAACCCATCCATATA
TGCATACAGTGTCGAAAATCAGCCGGATGAACGCGAGTCCAGGGACAACA
ACATCAAGTTTGCCGCTGAGCACGGCAATCTGAATTCCAATTCCAATCTG
AATCGTAATTACTACTACACCGATGATCCCAGTCCCGTTTCCAATCTGAA
TCCGACTGCCTCGCTGGCCACGCCTCCCGCCACCCAGCCCGCCCCGCAGA
CGGGCTGCACCCTGGACCGCCTGGCCGTCTACAAGGTCGTCTTGCACACC
TACTGGACCCGGGAGCTCTTCCCCAAGCACTATCCCGACTGGCGACCCAC
CGCCCAGTGGACCAAGACATTAGGTCGCACCCACAATGCCAACTATGCAC
TGTACCACATTGGACAACCGGCGACGGCGGCTGTCAAACAGTTTGCGGAA
TCGGGACGAACGGATCTGCTGGACAGCAATGCCGGCGAGCAGCAGCAGGT
CCAGATGCAGCTGCAGTCGCAGATGCAGGCGGGCAAATCCCCATCAGGTG
GGATCAGCAGCGGCACGACTAGTTTCAACGCCACAGCCGCATCCACAGCC
ACACCCACTGGTGGTAGTGGTGGCAGCGGTGGCAGCGGTGGCAGCGGTGG
CACTGGCACCACCACCGCCGAGCGCAGCGTGTTCGATGAGTTCAGCATGC
CGGCGATTCCGATGGGCGCCGGACGCAGTGAGGCAAAAGTGTTTGTCGAC
AGCAATCACAGTCTGGTCTCGCTAATGACACGCATTGTTCCCTCGCCGGA
CTGGTTCATCGGCGTGGATTCGTTCGAGCTCTGCGTGGGTGGCTCCTGGA
TCGATACGGTGACCGTTGAGCTGGATCCTTTGGATGCGGGCACGGATAAT
GGCTTCACCTTCACGGCGCCCAACTGGCCAACAGAACCTCAGGGCGTCAT
CTATCGGATCACCTCGCGTTATCCTGGACATCCTGCGGGTAGCTTTTATT
ATCCGAAGAGCAAACGATTGCCGCCCATCGCCACGTTCCAGTTTATCAAG
CTGAAGGAGTACGAGCTGAGCGAGGTGTTTAACATTGCCGAGGACGATCG
CAAGTACGAGACGGTCCAGACCCAGACCCACCTGGACGCGGAGCACAATC
ACGTGGAGATGAACAACGAGTTGTCCGCCAGCATCGAACGGGAACGACAA
ACGGAGCAGCAGCAGTTGCAGCAGAACGACGACGAGAGGCAGCGCATTCG
GTCCCAGCTGTTGGCCAAAATGAATCCCATCTATGGCAGCAACAACAGCC
TGCAGCCGGCACCTGGTCAGGTGGTCAGTGTGGTGCCGAAGAACGACAAG
CATGCGATCCTGCAGAGCATCGCCAGCAGCTATCGGCGTGCCGCAGATGC
CAGCGATGCAAACGCCTCCAAACCGACACCATCCGCGATTGGTGGTGGCA
AGGCCGGTGGTGCGGTGGGCGGTGGTGCTGCCACCCGCAGGCGGAGCTCC
GCGCAGCGTCGTCGTGATTGCCGCGTGAGCCACTGGTCCGAGTGGACGGC
CTGCAGCAAAAGTTGCGGCGTCGGCGAGATGCATCGCTACCGCAAGGTCA
TAAAGCACGGCAAGAGGGGCGGACGACAGTGCCCGGCGCTCCAGCAGTCC
AAGTGGTGCGGCACCGAGCGCAACTGTCACGGGTCGCAGACCTATTTTAA
TTGGTCCGATTCCGACACATGAAAGCTTTCTAGACCAT
BS12246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mspo-RB | 1806 | CG10145-PB | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| mspo-RA | 1806 | CG10145-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mspo-RB | 3131 | CG10145-RB | 351..2161 | 13..1823 | 9040 | 99.9 | Plus |
| mspo-RA | 2574 | CG10145-RA | 351..2161 | 13..1823 | 9040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14712810..14713272 | 475..13 | 2300 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14684153..14684609 | 928..472 | 2285 | 100 | Minus |
| 2R | 25286936 | 2R | 14672652..14673076 | 1805..1381 | 2125 | 100 | Minus |
| 2R | 25286936 | 2R | 14679943..14680174 | 1380..1149 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 14683545..14683772 | 1154..927 | 1125 | 99.6 | Minus |
| Xmm | 1049845 | Xmm | 780128..780174 | 710..756 | 190 | 93.6 | Plus |
| Xmm | 1049845 | Xmm | 745118..745160 | 752..710 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-28 02:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 679..721 | 748..706 | 161 | 86 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 684..717 | 752..719 | 152 | 94.1 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..777 | 658..512 | 144 | 61.5 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 689..722 | 756..723 | 134 | 88.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2371 | 1279..1326 | 120 | 75 | Plus |
BS12246.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:51 Download gff for
BS12246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 354..2158 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:23 Download gff for
BS12246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 355..2159 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:34 Download gff for
BS12246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 354..2158 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:37 Download gff for
BS12246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 355..2159 | 17..1821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:37 Download gff for
BS12246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14679943..14680172 | 1151..1380 | 100 | <- | Minus |
| 2R | 14683549..14683770 | 929..1150 | 100 | <- | Minus |
| 2R | 14684153..14684607 | 474..928 | 100 | <- | Minus |
| 2R | 14712812..14713268 | 17..473 | 100 | | Minus |
| 2R | 14672368..14672385 | 1804..1821 | 100 | <- | Minus |
| 2R | 14672654..14673076 | 1381..1803 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:23 Download gff for
BS12246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10559873..10559890 | 1804..1821 | 100 | <- | Minus |
| arm_2R | 10560159..10560581 | 1381..1803 | 100 | <- | Minus |
| arm_2R | 10567448..10567677 | 1151..1380 | 100 | <- | Minus |
| arm_2R | 10571054..10571275 | 929..1150 | 100 | <- | Minus |
| arm_2R | 10571658..10572112 | 474..928 | 100 | <- | Minus |
| arm_2R | 10600317..10600773 | 17..473 | 100 | | Minus |
BS12246.pep Sequence
Translation from 16 to 1821
> BS12246.pep
MGATPKTDFPAHWLLCILLALGSLSSKANAVSAYGASFISNPSIYAYSVE
NQPDERESRDNNIKFAAEHGNLNSNSNLNRNYYYTDDPSPVSNLNPTASL
ATPPATQPAPQTGCTLDRLAVYKVVLHTYWTRELFPKHYPDWRPTAQWTK
TLGRTHNANYALYHIGQPATAAVKQFAESGRTDLLDSNAGEQQQVQMQLQ
SQMQAGKSPSGGISSGTTSFNATAASTATPTGGSGGSGGSGGSGGTGTTT
AERSVFDEFSMPAIPMGAGRSEAKVFVDSNHSLVSLMTRIVPSPDWFIGV
DSFELCVGGSWIDTVTVELDPLDAGTDNGFTFTAPNWPTEPQGVIYRITS
RYPGHPAGSFYYPKSKRLPPIATFQFIKLKEYELSEVFNIAEDDRKYETV
QTQTHLDAEHNHVEMNNELSASIERERQTEQQQLQQNDDERQRIRSQLLA
KMNPIYGSNNSLQPAPGQVVSVVPKNDKHAILQSIASSYRRAADASDANA
SKPTPSAIGGGKAGGAVGGGAATRRRSSAQRRRDCRVSHWSEWTACSKSC
GVGEMHRYRKVIKHGKRGGRQCPALQQSKWCGTERNCHGSQTYFNWSDSD
T*
BS12246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mspo-PB | 601 | CG10145-PB | 1..601 | 1..601 | 3196 | 100 | Plus |
| mspo-PA | 601 | CG10145-PA | 1..601 | 1..601 | 3196 | 100 | Plus |
| fat-spondin-PA | 763 | CG6953-PA | 285..551 | 271..573 | 279 | 27.4 | Plus |
| CG17739-PA | 873 | CG17739-PA | 172..393 | 106..383 | 249 | 25.6 | Plus |
| CG30046-PC | 839 | CG30046-PC | 281..564 | 262..590 | 246 | 25.3 | Plus |
