BS12247.complete Sequence
806 bp assembled on 2008-08-15
GenBank Submission: FJ637115
> BS12247.complete
GAAGTTATCAGTCGACATGACTACCTTAATAGAACAGTTAATTACGAAAA
TGGGCCTAAGGGAGGAGCCAAACGTGCTAGAGAAAACCACCGAACTAGTA
CGCCTCCTGGAACTGCGCTCCACGAATGTCCCTCTGCAGATCAACGAGTA
CGGAAAGATAGTGCTGTGTGCGGATCTCGCTTCCTGCATGATTGGGATCG
CTTTCGACAAGGAGCAGGCACTGAAATTGTCAGGATTGCGAAAGAGCCAA
TACCTCAACAACAAGCGGATGTTCGAGAAGCTACTGGACCTAAACAAACT
GGCTAGCGTGAATGACATCTGTGTCCAGCTGGGTCTCAACGAAGTTGCCC
GCAAGGCGGAAGAGCTAATGACTCTCTTCAAGGGCGTAGCGGCCACCGAG
GACATGGGTACCGACACCAGCCATCCTCAGTACGCCACCATGGCCGTGTT
CCAGGCCTGCCGCCTGCTCAAAAAGAAGGTTTCGAAATCAAAGCTCATGC
CCTTCAGTAATTTGCGACCCTCCCAGTTTCAACTGCTCGAGCAGCAGTGG
GAACGCATGATAGCTAAGCACCACAAGGAGAGCAAAGTACCATCTAGCAC
CGATATGGAGGGTAAACTTAAGGAGAACCAGAATGAGAATATCAAGGGTC
ATGAGGCAAAAAAGGCACATAAGCCCCCACCGGAGGACTACGAAATATGG
AAGGCGCGAATGTTGGCCAAGGCGCAGGCCAAATTGAAGGAATTAGAAGC
ATCCCAATCGCATATGGATAGCCAGCTTCTCGAGGCTTAGAAGCTTTCTA
GACCAT
BS12247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-RA | 774 | CG1584-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-RA | 972 | CG1584-RA | 92..865 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9845565..9846273 | 790..82 | 3545 | 100 | Minus |
| 2R | 25286936 | 2R | 9846329..9846394 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:40:34 has no hits.
BS12247.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:26 Download gff for
BS12247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 66..846 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:00 Download gff for
BS12247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..865 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:26 Download gff for
BS12247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 66..839 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:06 Download gff for
BS12247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..865 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:06 Download gff for
BS12247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9845565..9846273 | 82..790 | 100 | <- | Minus |
| 2R | 9846330..9846394 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:00 Download gff for
BS12247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5733070..5733778 | 82..790 | 100 | <- | Minus |
| arm_2R | 5733835..5733899 | 17..81 | 100 | | Minus |
BS12247.pep Sequence
Translation from 16 to 789
> BS12247.pep
MTTLIEQLITKMGLREEPNVLEKTTELVRLLELRSTNVPLQINEYGKIVL
CADLASCMIGIAFDKEQALKLSGLRKSQYLNNKRMFEKLLDLNKLASVND
ICVQLGLNEVARKAEELMTLFKGVAATEDMGTDTSHPQYATMAVFQACRL
LKKKVSKSKLMPFSNLRPSQFQLLEQQWERMIAKHHKESKVPSSTDMEGK
LKENQNENIKGHEAKKAHKPPPEDYEIWKARMLAKAQAKLKELEASQSHM
DSQLLEA*
BS12247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-PA | 257 | CG1584-PA | 1..257 | 1..257 | 1300 | 100 | Plus |
