Clone BS12248 Report

Search the DGRC for BS12248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptRpL28-RA
Protein status:BS12248.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12248.complete Sequence

470 bp assembled on 2007-10-26

GenBank Submission: FJ637116

> BS12248.complete
GAAGTTATCAGTCGACATGGCAACCTCTTCGCACCTCAATTGGTTGATCA
TTCGCAACAACAACGCCTTCTTGTTGAAGAAGCGCGATGTGAAGAAGCCC
TTCAGCACAGAGCCAAACAACTTGGCCAGCGTGAGCTCGTACCGCTACAG
CGGCATCGTGCACAAGAAGACCCTGGGAGTCGTGCCAGCTGCCGACAAGA
AGGGCTTCACCGCCGTGCTGAAGAAGGGCAAGTATGCCCAGCGCCCCGCC
AAGAACACCGTGCGTGTTGACTTCAAGGCCGGTCCCCGCCGTTCCCTGAA
GAAGCTGAAGAACCTGCTTATCGGCTCCAAGTACCGCAAGGACCTGACAC
AGGCTGCCCTCCGCCGCGCTTCCGCTGTCCTGCGCTCCCAGAAGCCCGCC
CCCGTCAAGGGAAAGAAGGCCGAGTTTGCTAAGGGAAAGAAGCCCGAATA
AAAGCTTTCTAGACCATTCG

BS12248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 435 CG12740-PG 1..435 17..451 2175 100 Plus
RpL28-RF 435 CG12740-PF 1..435 17..451 2175 100 Plus
RpL28-RE 435 CG12740-PE 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 851 CG12740-RG 346..781 17..452 2180 100 Plus
RpL28-RF 624 CG12740-RF 119..554 17..452 2180 100 Plus
RpL28-RE 650 CG12740-RE 145..580 17..452 2180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3221466..3221709 353..110 1220 100 Minus
3L 28110227 3L 3221184..3221285 452..351 510 100 Minus
3L 28110227 3L 3221881..3221974 110..17 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:00:30 has no hits.

BS12248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:45 Download gff for BS12248.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:54 Download gff for BS12248.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 146..588 11..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:27 Download gff for BS12248.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 145..574 17..446 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:49 Download gff for BS12248.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 151..580 17..446 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:50 Download gff for BS12248.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 145..574 17..446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:50 Download gff for BS12248.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3221190..3221283 353..446 100 <- Minus
3L 3221467..3221709 110..352 100 <- Minus
3L 3221882..3221974 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:27 Download gff for BS12248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3221190..3221283 353..446 100 <- Minus
arm_3L 3221467..3221709 110..352 100 <- Minus
arm_3L 3221882..3221974 17..109 100   Minus

BS12248.pep Sequence

Translation from 16 to 450

> BS12248.pep
MATSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHK
KTLGVVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNL
LIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPE*

BS12248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-PG 144 CG12740-PG 1..144 1..144 726 100 Plus
RpL28-PF 144 CG12740-PF 1..144 1..144 726 100 Plus
RpL28-PE 144 CG12740-PE 1..144 1..144 726 100 Plus
RpL28-PD 144 CG12740-PD 1..144 1..144 726 100 Plus
RpL28-PA 144 CG12740-PA 1..144 1..144 726 100 Plus