BS12248.complete Sequence
470 bp assembled on 2007-10-26
GenBank Submission: FJ637116
> BS12248.complete
GAAGTTATCAGTCGACATGGCAACCTCTTCGCACCTCAATTGGTTGATCA
TTCGCAACAACAACGCCTTCTTGTTGAAGAAGCGCGATGTGAAGAAGCCC
TTCAGCACAGAGCCAAACAACTTGGCCAGCGTGAGCTCGTACCGCTACAG
CGGCATCGTGCACAAGAAGACCCTGGGAGTCGTGCCAGCTGCCGACAAGA
AGGGCTTCACCGCCGTGCTGAAGAAGGGCAAGTATGCCCAGCGCCCCGCC
AAGAACACCGTGCGTGTTGACTTCAAGGCCGGTCCCCGCCGTTCCCTGAA
GAAGCTGAAGAACCTGCTTATCGGCTCCAAGTACCGCAAGGACCTGACAC
AGGCTGCCCTCCGCCGCGCTTCCGCTGTCCTGCGCTCCCAGAAGCCCGCC
CCCGTCAAGGGAAAGAAGGCCGAGTTTGCTAAGGGAAAGAAGCCCGAATA
AAAGCTTTCTAGACCATTCG
BS12248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 435 | CG12740-PG | 1..435 | 17..451 | 2175 | 100 | Plus |
RpL28-RF | 435 | CG12740-PF | 1..435 | 17..451 | 2175 | 100 | Plus |
RpL28-RE | 435 | CG12740-PE | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 851 | CG12740-RG | 346..781 | 17..452 | 2180 | 100 | Plus |
RpL28-RF | 624 | CG12740-RF | 119..554 | 17..452 | 2180 | 100 | Plus |
RpL28-RE | 650 | CG12740-RE | 145..580 | 17..452 | 2180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3221466..3221709 | 353..110 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 3221184..3221285 | 452..351 | 510 | 100 | Minus |
3L | 28110227 | 3L | 3221881..3221974 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:00:30 has no hits.
BS12248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:45 Download gff for
BS12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RD | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:54 Download gff for
BS12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RD | 146..588 | 11..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:27 Download gff for
BS12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 145..574 | 17..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:49 Download gff for
BS12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RD | 151..580 | 17..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:50 Download gff for
BS12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 145..574 | 17..446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:50 Download gff for
BS12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3221190..3221283 | 353..446 | 100 | <- | Minus |
3L | 3221467..3221709 | 110..352 | 100 | <- | Minus |
3L | 3221882..3221974 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:27 Download gff for
BS12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3221190..3221283 | 353..446 | 100 | <- | Minus |
arm_3L | 3221467..3221709 | 110..352 | 100 | <- | Minus |
arm_3L | 3221882..3221974 | 17..109 | 100 | | Minus |
BS12248.pep Sequence
Translation from 16 to 450
> BS12248.pep
MATSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHK
KTLGVVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNL
LIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPE*
BS12248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-PG | 144 | CG12740-PG | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PF | 144 | CG12740-PF | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PE | 144 | CG12740-PE | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PD | 144 | CG12740-PD | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PA | 144 | CG12740-PA | 1..144 | 1..144 | 726 | 100 | Plus |