BS12249.complete Sequence
1469 bp assembled on 2006-11-01
GenBank Submission: FJ637117
> BS12249.complete
GAAGTTATCAGTCGACATGTACTATCTGAACAACGAGCCAGCCGCCCTTC
CATCTCCCGCAAATCTCGCCCCACGGGATGTGCACTCATCCACATTGGAG
CTGAAGACGGTGTCTATAAATCCGGATGATACCTACACTGTTCAGCAGGC
GATCAATGCCTTCGGTTTCGGATGGTTTCACGTCAAGCTGTCGCTCTTGG
TGGGGCTCTGCTGGATGTCCGACTCCATGGAAATGGCCATTCTCAGCATA
TTGGGCCCGTCTTTGTTCTGCGAGTGGAATGTCACCAAGTTCCAGCAGGC
ATCCGTCACAACAGTGGTGTTTTTGGGCATGATGTTGAGTTCCAGTTTTT
GGACACAGCTGAGCAACAGATATGGCCGGAAGTCGGCCCTCACATTGTTC
GGAGTACTACTAGTGCTGTATAGCATTCTCAGCTCGGTGGCTCCCAGTTA
CGCCTGGCTCCTGACCCTAAGAGGTCTCGTAGGCTTCGCCATCGGCTGCG
TTCCACAGTCAGTTACCTTGTACGCTGAGTTTCTGCCCACCAAGCACAAG
GGAAAGTGCGTCGTATTGATGGACTGCTTCTGGGCCTTGGGAGCTTGCTT
TGAAGTGGTCCTAGCACTGGTTGTGTATCCCTATTACGGATGGCGAGGTC
TCTTGGCCCTTTCGGCTACACCCCTACTCATTTTTACCATCCTATCGCCG
TGGCTCAGTGAATCGGCTCGCTATTACTCTTACAACGGTCACAATGATAA
GGCCATCAAGGTTCTGGAACAGATAGCTCACAACAACAAGCGCCACATGC
TGATGGGTCGGCTGATGGCCGACGACGAGCCCAGTTGCGCGGAGAGCTTT
AGATCCCTGCTCAGCCCGAGCCTGTACAGGACCACCATCCTGTTGTGGTT
CCTCTGGCTGGCCTCGGCCTTTTGCTACTACGGCCTGGTGCTGGTCACGA
CCGAGCTGCTGGTGGCCAGGAACAAGGAGAGCCATCCCAATGAGTGCGTC
ACCTTCATGACCTCCGACTTTATGGACCTGCTGTGGATCACCCTGTCCGA
GTTTCCTGGAATACTGCTGACCATCAAGGTGGTCAAGCTGTTTGGCAAGA
AGAAAACCATTGTTCTGCAGTACCTGGCGCTGGTTCTGTGCACTCTGGTG
CTGATGTCGGTGGAAAGTCGCTTCTCCACTTCCGTAACCCTCTTCATTGC
ACGCGGCACGATATCCGGCATCTTCCAGGCCATTTATGTGTACACTCCGG
AAATATACCCAGCTGCCTTGAGATCCGTCGGAGTTTCGGGCTGTTCCGTG
CTGGCCAGACTCGGCGCCATGCTGACCCCTTTCGTGGCGCAGGTGCTGAT
GGACTCGTCCAGAATTCAGGCCATGTCCACGTACGCAATCGTGGGCCTGC
TGGCCTCCATAGCCTGCGTCTTTCTGCCCAGGGAAACTGTTGGCTACCAC
TGAAAGCTTTCTAGACCAT
BS12249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4324-RC | 1437 | CG4324-PC | 1..1437 | 17..1453 | 7185 | 100 | Plus |
| CG4324-RA | 1437 | CG4324-PA | 1..1437 | 17..1453 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4324-RC | 1739 | CG4324-RC | 247..1683 | 17..1453 | 7185 | 100 | Plus |
| CG4324-RA | 1748 | CG4324-RA | 256..1692 | 17..1453 | 7185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24015321..24015717 | 1167..771 | 1985 | 100 | Minus |
| 2R | 25286936 | 2R | 24014973..24015260 | 1453..1166 | 1440 | 100 | Minus |
| 2R | 25286936 | 2R | 24016389..24016647 | 386..128 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 24015902..24016027 | 700..575 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 24016210..24016335 | 510..385 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 24016704..24016815 | 128..17 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 24015768..24015840 | 772..700 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 24016086..24016149 | 574..511 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:00:59 has no hits.
BS12249.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:48 Download gff for
BS12249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 1..1437 | 17..1453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:44 Download gff for
BS12249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 244..1694 | 6..1457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:06 Download gff for
BS12249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 256..1691 | 17..1452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:48 Download gff for
BS12249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 244..1694 | 6..1457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:58 Download gff for
BS12249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 256..1691 | 17..1452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:58 Download gff for
BS12249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24016390..24016646 | 129..385 | 100 | <- | Minus |
| 2R | 24016704..24016815 | 17..128 | 100 | | Minus |
| 2R | 24014974..24015258 | 1168..1452 | 100 | <- | Minus |
| 2R | 24015321..24015715 | 773..1167 | 100 | <- | Minus |
| 2R | 24015768..24015839 | 701..772 | 100 | <- | Minus |
| 2R | 24015902..24016027 | 575..700 | 100 | <- | Minus |
| 2R | 24016086..24016149 | 511..574 | 100 | <- | Minus |
| 2R | 24016210..24016334 | 386..510 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:06 Download gff for
BS12249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19904227..19904338 | 17..128 | 100 | | Minus |
| arm_2R | 19903733..19903857 | 386..510 | 100 | <- | Minus |
| arm_2R | 19903913..19904169 | 129..385 | 100 | <- | Minus |
| arm_2R | 19902497..19902781 | 1168..1452 | 100 | <- | Minus |
| arm_2R | 19902844..19903238 | 773..1167 | 100 | <- | Minus |
| arm_2R | 19903291..19903362 | 701..772 | 100 | <- | Minus |
| arm_2R | 19903425..19903550 | 575..700 | 100 | <- | Minus |
| arm_2R | 19903609..19903672 | 511..574 | 100 | <- | Minus |
BS12249.pep Sequence
Translation from 16 to 1452
> BS12249.pep
MYYLNNEPAALPSPANLAPRDVHSSTLELKTVSINPDDTYTVQQAINAFG
FGWFHVKLSLLVGLCWMSDSMEMAILSILGPSLFCEWNVTKFQQASVTTV
VFLGMMLSSSFWTQLSNRYGRKSALTLFGVLLVLYSILSSVAPSYAWLLT
LRGLVGFAIGCVPQSVTLYAEFLPTKHKGKCVVLMDCFWALGACFEVVLA
LVVYPYYGWRGLLALSATPLLIFTILSPWLSESARYYSYNGHNDKAIKVL
EQIAHNNKRHMLMGRLMADDEPSCAESFRSLLSPSLYRTTILLWFLWLAS
AFCYYGLVLVTTELLVARNKESHPNECVTFMTSDFMDLLWITLSEFPGIL
LTIKVVKLFGKKKTIVLQYLALVLCTLVLMSVESRFSTSVTLFIARGTIS
GIFQAIYVYTPEIYPAALRSVGVSGCSVLARLGAMLTPFVAQVLMDSSRI
QAMSTYAIVGLLASIACVFLPRETVGYH*
BS12249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4324-PC | 478 | CG4324-PC | 1..478 | 1..478 | 2465 | 100 | Plus |
| CG4324-PA | 478 | CG4324-PA | 1..478 | 1..478 | 2465 | 100 | Plus |
| CG3168-PG | 632 | CG3168-PG | 138..627 | 43..474 | 364 | 25 | Plus |
| CG3168-PF | 632 | CG3168-PF | 138..627 | 43..474 | 364 | 25 | Plus |
| CG3168-PE | 632 | CG3168-PE | 138..627 | 43..474 | 364 | 25 | Plus |
