BS12252.complete Sequence
1721 bp assembled on 2009-12-07
GenBank Submission: KX800488
> BS12252.complete
GAAGTTATCAGTCGACATGTTGATCTCGTGCAAATGCTCGAATTTCGTTG
CTTCGACTTCGAAATTGCAGCGCAGCAACAGCAGCAGCGGCGCAGGGGGC
CGCGTGGGCGGTGCAGAGGTCGCCAGCGGCGAGGTACCCACCGCGATCCT
CCTGTCGCAGGTGTTCCAGCAGAAGTATCCTCTGGACTTCGTCTTCTACA
GCCATATCATGGAGTTCTTTAAGCACGCCTATGGTCCCATTCCAGACCTC
ACCGTGGCTGTGATTAATCAGCGGGAGCTGTTGTATGGTCTCACCCTGGA
AGCCGCTGGCCAGAGTTGGCAGCTGAGCCTGTGCATCAACTGCAAGGAGG
TGCTATGCGCCAAGCGATTGACGGCGGGCGCCGGGGCCACGCCCACTCTC
TACCTCATCAACTGCACGCTGTTGACCAGCAGCGAGGAGCTGGCTCAACG
GAAGTCCAACAAAGCCTTCTCGGAGACCTTCGAGCTGCTGATCATGGATC
ACACAGGCAGTGACTCTGGATCCACTCGACCCACCAGTGGACTATCCAAC
TCCGCATCGAGTCTAAGCATCGGATCCCTGTCTTCGAATCCCACTGATGC
CAGGGTGCAGAGATTGAGAATGATACAAGCGCACCAGCAGGCGCGATTGC
AGGAGGAGATTGTGGAGACAAATGAGAGAATCGAGCGGTATACGCGCACT
CAGTTCCAGTTACTAAACAGTTTCCGGGAGAAATCGGATCAGGACTGCGC
GTTGCTATTCAAAGTTATTCGTGCGTTGCCCGAGCAGGCCTCGGAGCTAC
TCGATCGTGCCATGCTCCCTGCCCTTGATGTGGCGGCCAATCAGCCGCAG
AGTGCGACTGCCCGGCGCAGGAACACCATCAGCAGCCGGCGGGAGTTGAA
TGGTGGACCCACCACACCCACTACTACGTTGACACATCCGCCCAACTTCC
TATCGCTGAACCAGCAGCCGCAGCAACAGTTGCTGGCGCAGCAACAGCAG
CAACAGTTGCAGGCGCAACAGCAGCAGCAGCAGCAGGCCCCGCAGAGTGT
CTCGATGGCCAGGAAGATGTCGCACTTTGACACACCGCCCGCCACCCCAG
AAGCCACGCCCATGAGCGTGGGCAACAGCCCCACCTTCCGGCAGCAATCA
GCAGCCGGCGGTGCTGGTGGTCCACCCACCCAGACGTTGACCCCAAATGG
AGTGGGTCAGTCCAGTGTTAACGAAGATGCAGATGACTGCCTGTTCGATC
TGGAGGATGTGGATGCTCCGGTTCCGGTTCAGTCCGTGCCTGTGCCTAGC
TACACGCGTAGCCTGATCTACCAGCAGCAGCCTCAGCACAATCCCTTCCA
GCAGCTGAGCCAACAAAATGGCCTACGAAGTGTCCTAGATGACGAAGCTG
CGGATGAAGCTGAAGATGCTCTGGACCCGGATAGCTCCATTTCCATACCA
GTGCGAGGCGGAGGGCGTCCTAGCCATGCGCAGTTGATGAACTTCGCCCG
GAGTCTGCCCATCGAGATAGCAAACACCACGCTGGCCGAGAGAGCTGCTG
TGGCCAACAACAATAACTTCGGGCAGGGCTGCGAGGAGGGAATGGACAAC
ATCGACATAGCGGCAAGCATCCAAGCGCTGACCAGAAGTGTCCATGGCGA
GGCTGTTTTTGGGGACTTGCCACGGCCCCGCCTGCGATCTCAGATCGAGG
GCTAGAAGCTTTCTAGACCAT
BS12252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| L-RA | 1689 | CG10109-PA | 1..1689 | 17..1705 | 8445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| L-RA | 2632 | CG10109-RA | 394..2083 | 16..1705 | 8450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14495152..14496340 | 227..1415 | 5945 | 100 | Plus |
| 2R | 25286936 | 2R | 14481580..14481791 | 16..227 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 14496405..14496580 | 1414..1589 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 14496645..14496763 | 1587..1705 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:02:19 has no hits.
BS12252.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:47 Download gff for
BS12252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 384..2067 | 22..1705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:16 Download gff for
BS12252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 400..2083 | 22..1705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:21 Download gff for
BS12252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 384..2067 | 22..1705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:31 Download gff for
BS12252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 400..2083 | 22..1705 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:31 Download gff for
BS12252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14496407..14496579 | 1416..1588 | 100 | -> | Plus |
| 2R | 14496647..14496763 | 1589..1705 | 100 | | Plus |
| 2R | 14481586..14481790 | 22..226 | 100 | -> | Plus |
| 2R | 14495152..14496340 | 227..1415 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:16 Download gff for
BS12252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10383912..10384084 | 1416..1588 | 100 | -> | Plus |
| arm_2R | 10384152..10384268 | 1589..1705 | 100 | | Plus |
| arm_2R | 10369091..10369295 | 22..226 | 100 | -> | Plus |
| arm_2R | 10382657..10383845 | 227..1415 | 100 | -> | Plus |
BS12252.pep Sequence
Translation from 16 to 1704
> BS12252.pep
MLISCKCSNFVASTSKLQRSNSSSGAGGRVGGAEVASGEVPTAILLSQVF
QQKYPLDFVFYSHIMEFFKHAYGPIPDLTVAVINQRELLYGLTLEAAGQS
WQLSLCINCKEVLCAKRLTAGAGATPTLYLINCTLLTSSEELAQRKSNKA
FSETFELLIMDHTGSDSGSTRPTSGLSNSASSLSIGSLSSNPTDARVQRL
RMIQAHQQARLQEEIVETNERIERYTRTQFQLLNSFREKSDQDCALLFKV
IRALPEQASELLDRAMLPALDVAANQPQSATARRRNTISSRRELNGGPTT
PTTTLTHPPNFLSLNQQPQQQLLAQQQQQQLQAQQQQQQQAPQSVSMARK
MSHFDTPPATPEATPMSVGNSPTFRQQSAAGGAGGPPTQTLTPNGVGQSS
VNEDADDCLFDLEDVDAPVPVQSVPVPSYTRSLIYQQQPQHNPFQQLSQQ
NGLRSVLDDEAADEAEDALDPDSSISIPVRGGGRPSHAQLMNFARSLPIE
IANTTLAERAAVANNNNFGQGCEEGMDNIDIAASIQALTRSVHGEAVFGD
LPRPRLRSQIEG*
BS12252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| L-PA | 562 | CG10109-PA | 1..562 | 1..562 | 2855 | 100 | Plus |
