Clone BS12257 Report

Search the DGRC for BS12257

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptMst85C-RA
Protein status:BS12257.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12257.complete Sequence

761 bp assembled on 2006-11-01

GenBank Submission: FJ637118

> BS12257.complete
GAAGTTATCAGTCGACATGAAGCCCCAGAGCAAGCGGAAATCATTCCCAT
TCAATGCGCCTCCTCCGGGCGGTATCATGGACTTCGGATTCGGGAGCTGC
AGCACCTTCGGCAATTCGGTGGAGAATGATCTGGTAAAATGGCAGCATAA
GCGAAAATCCGAGCAGCCGGCACCGGCAGTGCTACCACCCAAAATGCTTA
TAACCGAGGAGAGGATCACCCAGCATTTCAGCGGTCTATCGCTGGATCCG
AAGATCAATGTCGCCGCCACGGCCGTTGTTAGCAACAACAACAGCGTGGC
CAGCGTTACGGGCGGACTGGCCACGGATGATATACCATCCACCAGCACCG
GGAAGACCCACCACCCCAATCCCGCCTATCAAATGGCGGCCATGGAACTG
GAGCAGAAACTGCGCAATGCCAATCGCATCGTAATTTGTGATGGCCTTAA
GCCAGGATCGGGTCCCGGTTCCGCTCCACCTGTAATACCACCGGAGTGGC
TAATCAAGTCCATACCACGTCCCTGCACCGCCTTGGTCCCTTGGCAGCCT
TCGCCACTGCAGATGCCGATGCCGATGCCGGAAGTCAAGATGGTGTCGCC
CCAAATAGTGGCACCCATGGCTGCGGCACCGGCGGTCCAGGAGCTGGATG
ACTACGATGACGATCTGGAGTTCTTCGAGAACAACAACACGTGCAGCGTG
AATCTTAACAAGTCTGAGCAGGAGCACATGGACGAAGACCTGTAGAAGCT
TTCTAGACCAT

BS12257.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mst85C-RB 729 CG11993-PB 1..729 17..745 3645 100 Plus
Mst85C-RA 729 CG11993-PA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Mst85C-RB 1330 CG11993-RB 119..847 17..745 3645 100 Plus
Mst85C-RA 1352 CG11993-RA 141..869 17..745 3645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9051187..9051748 184..745 2810 100 Plus
3R 32079331 3R 9050961..9051127 17..183 835 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:40:22 has no hits.

BS12257.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:26 Download gff for BS12257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:22 Download gff for BS12257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 136..866 13..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:09 Download gff for BS12257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 141..869 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:26 Download gff for BS12257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 136..866 13..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:58 Download gff for BS12257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 141..869 17..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:58 Download gff for BS12257.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9050961..9051127 17..183 100 -> Plus
3R 9051187..9051748 184..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:09 Download gff for BS12257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4876683..4876849 17..183 100 -> Plus
arm_3R 4876909..4877470 184..745 100   Plus

BS12257.pep Sequence

Translation from 16 to 744

> BS12257.pep
MKPQSKRKSFPFNAPPPGGIMDFGFGSCSTFGNSVENDLVKWQHKRKSEQ
PAPAVLPPKMLITEERITQHFSGLSLDPKINVAATAVVSNNNSVASVTGG
LATDDIPSTSTGKTHHPNPAYQMAAMELEQKLRNANRIVICDGLKPGSGP
GSAPPVIPPEWLIKSIPRPCTALVPWQPSPLQMPMPMPEVKMVSPQIVAP
MAAAPAVQELDDYDDDLEFFENNNTCSVNLNKSEQEHMDEDL*

BS12257.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mst85C-PB 242 CG11993-PB 1..242 1..242 1290 100 Plus
Mst85C-PA 242 CG11993-PA 1..242 1..242 1290 100 Plus