BS12260.complete Sequence
1400 bp assembled on 2006-11-01
GenBank Submission: FJ637119
> BS12260.complete
GAAGTTATCAGTCGACATGAGGGGCATGATAATTGTGCCCATGGACCTGG
AACCCGGCTTCCGCAAAGCAGACATACACAATATACCCGCTTTGAACAGC
GGAATGGTGTACAATTTTTGTCTATCCGGCGCATCTGAGAAATCAAAACA
AATACCAACGAATAGATGTGATCTCCTCACGGATTACGTCCAGGTGCGCA
GACATGGCGACGTGTGCGAACTCAAGGGACTCGTGTTTTCTGCCACCGAC
TTCGCCAACACGGTAACTCACGCCAATGTATCGCTTAAGATCGTCGAAAG
TGCTCAGATGATCATGGACGGTCAATGCAGCCTGTGCACTGCAGCATGTA
CTTGTGCCCACATCGTGGCCTTCACCTTCTGGCTGCTAAACAAGAGCACA
GATCGAAATCCCTCGGCTGTGGTGGAGTTTTGGGGCCACGAGTTGGAAAA
TCTGGTGCAACCGGAGCCCACAACTGCTACTCGAATATGTGATATAATTC
CCAAGGATGATGTGCGAATGGAAAGCGAACTAAACTCGAAAGAACTTAGC
GCCAGCGAGGGAGAGGCTTTCCTAGTGACCATTCTGAATGAACTGGCCGA
CTGTGGCAGGGACTCGGCGCTCTACCGGCAATGTGTGGAGACCACCGATG
AGTTCGAGCCCATGTTCGTACACCATGTGCTGCTCCGAGCAAATGAGTAC
AATGTCGTCGATCCGTCCAGCTATGTGCAACACATGGAGGCACAGGCACA
TACGGGTATTATCGAAAGTCTGTACGAGGCAACGCGAAGCAAATACAAAT
CCCGATTGTGGGTGGAGGTACAGTATATGCGCATCCGTTGCTCCATGATG
CACATGATCATAAGCCGCAAAACCTCTGATGATGACGATCAAATCTTCAA
TATGATGTTTTGCAGAGGACGTGACAAGAATAACGAGGATCGGGTGCAGC
AGAAGGAGCACAAGCGCTTCATATTGAAACAGACTGAGAAGCTGGAGAAC
AAGAACTACTTAGAATGCGGTCTGATCCTGCACGAGAACTTCCCCTTCCT
GTGCGCCGCCCCTGATGGCATCACGGACGATCACATTGTCGAAATCAAAT
CACCAAAGACTGACGAGGACTTCGAGAAGTACCTCGAGGCACGCGAATCT
ATTGCACCCAAGTACATGGCCCAAATACAAATCCAGATGTTTGCGGCGAA
TGTTAAAAAGGCGCTCTACTGCGTGCTAAGTCCCACGTTCGAGAGCAACG
GAGCACTACACTACGTTTGGGTACAGGCGGATCCGGAATTCGTTAGCAGT
TTGCTGAGCATGGCTGAAGACTTCTGGCGGGACGTTGTCTTTCCCCGCCT
ATTGAATATCTACCCCCAGTGCCCAGGTCAATAAAAGCTTTCTAGACCAT
BS12260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8366-RA | 1368 | CG8366-PA | 1..1368 | 17..1384 | 6825 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8366-RA | 1472 | CG8366-RA | 79..1447 | 17..1385 | 6830 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15955574..15956611 | 348..1385 | 5175 | 99.9 | Plus |
| 2R | 25286936 | 2R | 15955323..15955518 | 154..349 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 15955118..15955254 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:03 has no hits.
BS12260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:49 Download gff for
BS12260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8366-RA | 1..1368 | 17..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:45 Download gff for
BS12260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8366-RA | 77..1445 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:47 Download gff for
BS12260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8366-RA | 79..1444 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:49 Download gff for
BS12260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8366-RA | 77..1445 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:16 Download gff for
BS12260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8366-RA | 79..1444 | 17..1382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:16 Download gff for
BS12260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15955118..15955254 | 17..153 | 100 | -> | Plus |
| 2R | 15955323..15955516 | 154..347 | 100 | -> | Plus |
| 2R | 15955574..15956608 | 348..1382 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:47 Download gff for
BS12260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11842623..11842759 | 17..153 | 100 | -> | Plus |
| arm_2R | 11842828..11843021 | 154..347 | 100 | -> | Plus |
| arm_2R | 11843079..11844113 | 348..1382 | 99 | | Plus |
BS12260.pep Sequence
Translation from 16 to 1383
> BS12260.pep
MRGMIIVPMDLEPGFRKADIHNIPALNSGMVYNFCLSGASEKSKQIPTNR
CDLLTDYVQVRRHGDVCELKGLVFSATDFANTVTHANVSLKIVESAQMIM
DGQCSLCTAACTCAHIVAFTFWLLNKSTDRNPSAVVEFWGHELENLVQPE
PTTATRICDIIPKDDVRMESELNSKELSASEGEAFLVTILNELADCGRDS
ALYRQCVETTDEFEPMFVHHVLLRANEYNVVDPSSYVQHMEAQAHTGIIE
SLYEATRSKYKSRLWVEVQYMRIRCSMMHMIISRKTSDDDDQIFNMMFCR
GRDKNNEDRVQQKEHKRFILKQTEKLENKNYLECGLILHENFPFLCAAPD
GITDDHIVEIKSPKTDEDFEKYLEARESIAPKYMAQIQIQMFAANVKKAL
YCVLSPTFESNGALHYVWVQADPEFVSSLLSMAEDFWRDVVFPRLLNIYP
QCPGQ*
BS12260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8366-PA | 455 | CG8366-PA | 1..455 | 1..455 | 2407 | 100 | Plus |
