BS12265.complete Sequence
1352 bp assembled on 2006-11-01
GenBank Submission: FJ637121
> BS12265.complete
GAAGTTATCAGTCGACATGCGGTGCAGCCTGAGGATGCAGTTGCTCCTGC
TCCTGGGACTCTGTGTGTTCATCTCCAGGATCCAAGGCCAGCTGATTGGC
GGCGAGGAGGACGAAGAGGACGAGGAGGAGGAAGAAGAAGAGGAGGAGAG
CGTCGAGGACGAAACGCCGGAGGATCGACTGCAGCGCAAGAACATCAAAC
AGGATTCGACTCTCAGTGTGGACAAATTAATCGCCAAGTACGGCTACGAG
TCGGAGGTGCACCATGTGACCACCGAGGACGGATACATTCTCACCATGCA
TCGCATCCGCAAGCAGGGCGCCCCGCCCTTCCTCCTGCAGCACGGACTCG
TGGACAGCTCGGCGGGATTTGTGGTAATGGGGCCCAACGTGAGCCTGGCC
TACTTGCTGGCCGACCACAACTACGATGTCTGGCTGGGGAACGCGCGTGG
CAATCGCTACTCGAGGAATCACACCACCCTCGACCCGGACGAGTCCAAGT
TCTGGGACTTCAGTTGGCACGAGATCGGGATGTACGACTTGCCAGCGATG
ATTGATCACGTGCTAAAGGTGACCGGATTCCCGAAACTGCACTACGCCGG
CCACTCGCAGGGATGCACCTCTTTCTTCGTGATGTGCTCCATGCGTCCAG
CCTACAACGACAAGGTCGTTTCCATGCAGGCCCTCGCACCCGCCGTTTAT
GCCAAGGAGACCGAGGACCACCCCTACATTCGGGCCATCAGTCTGTACTT
TAATAGCCTGGTAGGCAGCTCGATTAGGGAGATGTTCAATGGGGAGTTCC
GGTTTCTATGCCGGATGACGGAGGAGACGGAACGGCTGTGCATCGAGGCC
GTATTTGGAATAGTGGGTCGCAACTGGAACGAGTTTAACAGGAAAATGTT
CCCTGTGATCCTGGGTCACTACCCGGCAGGAGTGGCTGCCAAGCAGGTGA
AGCACTTCATTCAGATCATCAAGAGCGGTCGCTTTGCTCCTTATAGCTAC
AGTTCCAATAAGAATATGCAGTTGTACAGGGATCACCTGCCACCTCGTTA
CAACCTGAGTCTGGTGACGGTGCCCACTTTCGTGTACTACTCTACCAATG
ATCTGCTTTGCCACCCCAAGGATGTGGAGTCCATGTGCGATGACCTGGGC
AACGTGACGGGCAAGTACCTGGTGCCGCAGAAGGAGTTCAACCACATGGA
CTTCCTCTGGGCCATCGATGTGCGAAAAATGCTCTATCGCCGTATGCTGC
AGGTCCTCGGAAAAGTGCCAGAGGGCTCGCCAGAAGAGGCTAATCGATCC
AGAAGGGAAATCCGGGGAAAATTCATACGTTCTTAAAAGCTTTCTAGACC
AT
BS12265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lip1-RB | 1320 | CG7279-PB | 1..1320 | 17..1336 | 6600 | 100 | Plus |
| Lip1-RA | 1320 | CG7279-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
| CG31089-RA | 1266 | CG31089-PA | 372..486 | 424..538 | 185 | 77.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lip1-RB | 1572 | CG7279-RB | 182..1501 | 17..1336 | 6600 | 100 | Plus |
| Lip1-RA | 1681 | CG7279-RA | 182..1501 | 17..1336 | 6600 | 100 | Plus |
| CG31089-RA | 1408 | CG31089-RA | 426..540 | 424..538 | 185 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10699588..10700032 | 1336..892 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 10700296..10700652 | 754..398 | 1785 | 100 | Minus |
| 2L | 23513712 | 2L | 10701159..10701363 | 221..17 | 1025 | 100 | Minus |
| 2L | 23513712 | 2L | 10700717..10700895 | 398..220 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 10700090..10700227 | 892..755 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 25903135..25903249 | 424..538 | 185 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:06:55 has no hits.
BS12265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:36 Download gff for
BS12265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip1-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:28 Download gff for
BS12265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip1-RA | 96..1415 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:27 Download gff for
BS12265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip1-RA | 182..1499 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:36 Download gff for
BS12265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip1-RA | 96..1415 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:16 Download gff for
BS12265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip1-RA | 182..1499 | 17..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:16 Download gff for
BS12265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10699590..10700031 | 893..1334 | 100 | <- | Minus |
| 2L | 10700090..10700227 | 755..892 | 100 | <- | Minus |
| 2L | 10700296..10700651 | 399..754 | 100 | <- | Minus |
| 2L | 10700717..10700894 | 221..398 | 100 | <- | Minus |
| 2L | 10701160..10701363 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:27 Download gff for
BS12265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10701160..10701363 | 17..220 | 100 | | Minus |
| arm_2L | 10700717..10700894 | 221..398 | 100 | <- | Minus |
| arm_2L | 10699590..10700031 | 893..1334 | 100 | <- | Minus |
| arm_2L | 10700090..10700227 | 755..892 | 100 | <- | Minus |
| arm_2L | 10700296..10700651 | 399..754 | 100 | <- | Minus |
BS12265.pep Sequence
Translation from 16 to 1335
> BS12265.pep
MRCSLRMQLLLLLGLCVFISRIQGQLIGGEEDEEDEEEEEEEEESVEDET
PEDRLQRKNIKQDSTLSVDKLIAKYGYESEVHHVTTEDGYILTMHRIRKQ
GAPPFLLQHGLVDSSAGFVVMGPNVSLAYLLADHNYDVWLGNARGNRYSR
NHTTLDPDESKFWDFSWHEIGMYDLPAMIDHVLKVTGFPKLHYAGHSQGC
TSFFVMCSMRPAYNDKVVSMQALAPAVYAKETEDHPYIRAISLYFNSLVG
SSIREMFNGEFRFLCRMTEETERLCIEAVFGIVGRNWNEFNRKMFPVILG
HYPAGVAAKQVKHFIQIIKSGRFAPYSYSSNKNMQLYRDHLPPRYNLSLV
TVPTFVYYSTNDLLCHPKDVESMCDDLGNVTGKYLVPQKEFNHMDFLWAI
DVRKMLYRRMLQVLGKVPEGSPEEANRSRREIRGKFIRS*
BS12265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lip1-PB | 439 | CG7279-PB | 1..439 | 1..439 | 2335 | 100 | Plus |
| Lip1-PA | 439 | CG7279-PA | 1..439 | 1..439 | 2335 | 100 | Plus |
| CG31871-PA | 531 | CG31871-PA | 68..437 | 57..417 | 887 | 45.8 | Plus |
| Lip4-PB | 432 | CG6113-PB | 62..424 | 59..414 | 831 | 44.7 | Plus |
| Lip4-PA | 434 | CG6113-PA | 62..426 | 59..414 | 825 | 44.4 | Plus |
