Clone BS12266 Report

Search the DGRC for BS12266

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptRpS15Aa-RA
Protein status:BS12266.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12266.complete Sequence

425 bp assembled on 2006-11-01

GenBank Submission: FJ638843

> BS12266.complete
GAAGTTATCAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCTTGA
AGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGT
CCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGG
CTATATCGGCGAATTCGAGATCGTCGACGATCATCGTTCCGGCAAGATCG
TTGTCAACCTGACCGGTAGGCTAAACAAGTGCGGCGTCATCTCGCCCCGC
TTCGATGTGCCCATCAACGACATCGAGAAATGGACCAACAATCTGTTGCC
CTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGG
ACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTC
TTCTTCTAGAAGCTTTCTAGACCAT

BS12266.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15Aa-RF 393 CG2033-PF 1..393 17..409 1965 100 Plus
RpS15Aa-RE 393 CG2033-PE 1..393 17..409 1965 100 Plus
RpS15Aa-RD 393 CG2033-PD 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15Aa-RF 674 CG2033-RF 69..463 16..410 1975 100 Plus
RpS15Aa-RE 741 CG2033-RE 136..530 16..410 1975 100 Plus
RpS15Aa-RD 877 CG2033-RD 136..530 16..410 1975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13335984..13336378 410..16 1975 100 Minus
2R 25286936 2R 10821813..10822206 17..410 1865 98.2 Plus
2L 23513712 2L 14747017..14747075 410..352 265 96.6 Minus
Blast to na_te.dros performed on 2014-11-27 15:02:11 has no hits.

BS12266.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:37 Download gff for BS12266.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Aa-RD 1..393 17..409 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:29 Download gff for BS12266.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Aa-RC 77..475 9..410 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:21 Download gff for BS12266.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Aa-RD 137..529 17..409 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:37 Download gff for BS12266.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Aa-RC 77..475 9..410 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:25 Download gff for BS12266.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15Aa-RD 137..529 17..409 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:25 Download gff for BS12266.complete
Subject Subject Range Query Range Percent Splice Strand
X 13335985..13336377 17..409 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:21 Download gff for BS12266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13230018..13230410 17..409 100   Minus

BS12266.pep Sequence

Translation from 16 to 408

> BS12266.pep
MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEF
EIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFG
YVVLTTSGGIMDHEEARRKHLGGKILGFFF*

BS12266.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15Aa-PF 130 CG2033-PF 1..130 1..130 681 100 Plus
RpS15Aa-PE 130 CG2033-PE 1..130 1..130 681 100 Plus
RpS15Aa-PD 130 CG2033-PD 1..130 1..130 681 100 Plus
RpS15Aa-PA 130 CG2033-PA 1..130 1..130 681 100 Plus
RpS15Aa-PC 130 CG2033-PC 1..130 1..130 681 100 Plus