BS12267.complete Sequence
1391 bp assembled on 2007-10-17
GenBank Submission: FJ637122
> BS12267.complete
GAAGTTATCAGTCGACATGGAAAAGTTAATCACAATTTGCCTCCTCCTGA
GGATTCTACAATCGTGTGCTATGCCCATTATTGACCCAGATAGTATAGAC
GAATCCCTTGCGTGTCCACCGTGTGAGAATGACTTTCCCATCTGTTACAA
AGTGATCGTGGAGGTGGAACGGGGCAATGGACTGCCCGGTAGCTGTTGTC
CTCGCTACGAGTGCCTCGATGAGGAACCTGTCTGCGATGGTTCCAAAAGG
AGATTCTATAAGAACAAGTGCACTGTGTGCGATCCTTGCGAACCGCTGGC
CATTCAGTGCAAGGAAATATGTCCAATGGAAGAACCCGAACCCATTTGCC
TGTCTGACAACAATGAGTACCACAGAAATGGCGATATTTGGATGGAAAAC
AATGGTTGTACTACATGCATGTGCGAAGGTGGATATGTCACCCGCAATGC
TGTTCAGTGCAATCATTATTATCGGTGCAACAATCCCGTTGAGGTCAAGG
GACAGTGCTGTCCGGTTTGTCCGGACGAGCTGGGTGTGAGTAACAGTATC
TATGACGATGGTAATCACAAGTATAGAAACACCACTTCAGCACCAATTTT
GGGCGAAAGCGAATCCTCCAGTTCAGGGTGGAGCTCCACTGTGCCAACAG
ATACTTCTGATTCCGTTCCAGACACCAGCGGTTCACCCAATAGCTCATCT
ACATCATCTGAACTGGCCACACCGACTCCGAACACAAGTGAATTATCCAG
TTCCACAGAGAGGACAAGTACGGATTCGAGTTATGAACAACTTGGAGAAT
TTGCCACTTCCGAGTCGCCGGATCTCAGAACCGACTCAGAAGAACAAGAA
ACCTCAAGTTCTGATTCTGCAATGGAGACTACCACAAATCCAACCACATT
CGAAGCAACAGCAACTTCCACAGTTTCAAGCACTTCAATGGAACTTCCCA
CTGCAACAGATGATGGTATCACCAAAATGGATTTTAATCCTGATGGCAGA
ACACCGAAAGCAACTGATGAGCCCACCGTGATCTTAGTCAATGCAACTAA
CTTCTTATCCGTGGTGACCGATAATCCCATCACGAATCAACCGGCGGTCG
TGGCGCCCGAATCGACCAGTCAGATTAAGGATCTCAACAGTATGGAGATC
CAGCAAATAAGGTATCCCTACGCAGAGGTGCCCCAGGAGCGCATCCAAAC
CGATTGGCCTTTGGAATGCGTGGTTATAATGGGCTTTGTTATACTTATAG
TGTTTATATCCCTTTATGCCATCGTGAAGAGATATTCGAAAAACAAAAAA
TACCATGCCATACCATTAAATCCAGTTCGAAAGCTGAATGAAACGGAGAA
AGCGAAGACGGAGCAAAAGTTGTGAAAGCTTTCTAGACCAT
BS12267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd2-RA | 1359 | CG4786-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd2-RA | 2245 | CG4786-RA | 410..1768 | 17..1375 | 6795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20528449..20529756 | 1375..68 | 6540 | 100 | Minus |
| 3L | 28110227 | 3L | 20538898..20538949 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:30:18 has no hits.
BS12267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:46 Download gff for
BS12267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4786-RA | 1..1359 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:39 Download gff for
BS12267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4786-RA | 404..1770 | 14..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:43 Download gff for
BS12267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd2-RA | 410..1767 | 17..1374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:34 Download gff for
BS12267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4786-RA | 407..1764 | 17..1374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:39 Download gff for
BS12267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd2-RA | 410..1767 | 17..1374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:39 Download gff for
BS12267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20528450..20529755 | 69..1374 | 100 | <- | Minus |
| 3L | 20538898..20538949 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:43 Download gff for
BS12267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20521550..20522855 | 69..1374 | 100 | <- | Minus |
| arm_3L | 20531998..20532049 | 17..68 | 100 | | Minus |
BS12267.pep Sequence
Translation from 16 to 1374
> BS12267.pep
MEKLITICLLLRILQSCAMPIIDPDSIDESLACPPCENDFPICYKVIVEV
ERGNGLPGSCCPRYECLDEEPVCDGSKRRFYKNKCTVCDPCEPLAIQCKE
ICPMEEPEPICLSDNNEYHRNGDIWMENNGCTTCMCEGGYVTRNAVQCNH
YYRCNNPVEVKGQCCPVCPDELGVSNSIYDDGNHKYRNTTSAPILGESES
SSSGWSSTVPTDTSDSVPDTSGSPNSSSTSSELATPTPNTSELSSSTERT
STDSSYEQLGEFATSESPDLRTDSEEQETSSSDSAMETTTNPTTFEATAT
STVSSTSMELPTATDDGITKMDFNPDGRTPKATDEPTVILVNATNFLSVV
TDNPITNQPAVVAPESTSQIKDLNSMEIQQIRYPYAEVPQERIQTDWPLE
CVVIMGFVILIVFISLYAIVKRYSKNKKYHAIPLNPVRKLNETEKAKTEQ
KL*
BS12267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd2-PA | 452 | CG4786-PA | 1..452 | 1..452 | 2420 | 100 | Plus |
| CG13252-PA | 384 | CG13252-PA | 116..312 | 34..247 | 170 | 30 | Plus |
