BS12269.complete Sequence
1442 bp assembled on 2006-11-01
GenBank Submission: FJ637123
> BS12269.complete
GAAGTTATCAGTCGACATGGCGAGGTTGGAAGTTATAAGAGGGCTGACCT
TTGCCCTGCTGCTGACGCAGTTGCTGGCAGCCCACGTCGCCCGGGCGGAG
GTCATCGATGCGGAGGAGACGGATCGCTTCTGCTACCCGGAGTCCTCGAA
GAACTCCCGGCGGTCCTGTGAGTGCAGCAACGTGAGTGCTTCTCCCTGGG
GAAACCGAGCCCTGCGCATCGACTGCAGCTACAAGGACTACAAGGTGGCG
GATCTCTCCCTGCTGCTGCCACTGTACATCGACTCCCTGGACCTGTCCTG
GAACGCCCTGGACTCAGTACCGATCTTCACTAGCGACAGTCTGCACCAGC
TGAACCTGAGGCACAACAACATTTCGCAGTTGGTGTCCGGAAACTTCAAG
CAACTGACCAGTTTGAGGGAGCTGTATCTGGGCTGGAACAGCATTGGCAA
ACTAGAGTCCGGATCTTTTGACGGATTGCCACATCTGCAGGTCCTTGACC
TAGCCCACAACAATCTGCACTTGCTGCCCGGTCATCTTTTTGCCCCGCTT
TTGGTCCTGGGCACCTTGGACATCTCTTGGAATCGACGCTTCAACGAGTC
TGGCGGGGATCTATACACCGGACTCGGGGTGAACTGGAAACTCTCCACCT
TAAGACTGGACGCTTGTAGCCTAAATGATCTTCACCTGCCCGTAAATGCA
CCTCTGAAAGAGCTTTCCCTCCGTCGAAACCAGTTGAAGCGGATTCCCAC
ACAGCTGCCGGAGACTTTACTCCGCCTAGACATTAGCGACAATCTGCTGG
AGGAGCTGCTGCCGGAGGACACGGCTAATCTCACCCAGGTGCGCCAACTT
TTTATCGAGGACATGCCGGTGCTCCAGAGGGTGGTGGCCAATTCCCTGAC
CCACGTAGATGTCCTCGAGACATTGAGCTTCCAGAACAGCCGTCAGCTTA
GCCACTTGGACGCGGAGGCCTTTGGACCCATCATGACCACCCCCACCAAA
AAAAGAGCTCTGCGGTCGCTGAGCTTTCGCGGCACTATGCTGCGCACCTT
TAATTCCACGCTGGCGCCGATTTTTACTCAGCTTGCCGAACTGGATCTCA
ACGGTCTGCCGCTGCAGTGTGACTGCGAGCTCGTCTGGCTGAAGCAGCTG
CCGGTCCAAACCAACGGGCGCTGCTACAAGCCGGCCCGCATCCGTGGCAT
GCTGGTCACCTCAGCCCGCGGCGACGCCTTCAGCTGCGACACCTGGCCGA
GATGGGCCTACGGCCTGGTGGTGCTCTCACTGATCGCCCTCAGCGCCGCG
GGGATCTACCTGATCGTCATGGGACTGAGACCCCATCGGGGAGTCACCAT
GCGGCGCAAGGTCGGTGCCGGCAGTCCCTACGCCCGCGTCACCATCGAGC
CCAATCGCCAGGAGAATCCCCACTAGAAGCTTTCTAGACCAT
BS12269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-RA | 1410 | CG4781-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-RA | 1557 | CG4781-RA | 28..1437 | 17..1426 | 7050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24640803..24642212 | 1426..17 | 7050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:38:08 has no hits.
BS12269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:38 Download gff for
BS12269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 1..1410 | 17..1426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:31 Download gff for
BS12269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 26..1440 | 17..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:43 Download gff for
BS12269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 28..1437 | 17..1426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:38 Download gff for
BS12269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 26..1440 | 17..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:58 Download gff for
BS12269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 28..1437 | 17..1426 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:58 Download gff for
BS12269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24640803..24642212 | 17..1426 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:43 Download gff for
BS12269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20528326..20529735 | 17..1426 | 100 | | Minus |
BS12269.pep Sequence
Translation from 16 to 1425
> BS12269.pep
MARLEVIRGLTFALLLTQLLAAHVARAEVIDAEETDRFCYPESSKNSRRS
CECSNVSASPWGNRALRIDCSYKDYKVADLSLLLPLYIDSLDLSWNALDS
VPIFTSDSLHQLNLRHNNISQLVSGNFKQLTSLRELYLGWNSIGKLESGS
FDGLPHLQVLDLAHNNLHLLPGHLFAPLLVLGTLDISWNRRFNESGGDLY
TGLGVNWKLSTLRLDACSLNDLHLPVNAPLKELSLRRNQLKRIPTQLPET
LLRLDISDNLLEELLPEDTANLTQVRQLFIEDMPVLQRVVANSLTHVDVL
ETLSFQNSRQLSHLDAEAFGPIMTTPTKKRALRSLSFRGTMLRTFNSTLA
PIFTQLAELDLNGLPLQCDCELVWLKQLPVQTNGRCYKPARIRGMLVTSA
RGDAFSCDTWPRWAYGLVVLSLIALSAAGIYLIVMGLRPHRGVTMRRKVG
AGSPYARVTIEPNRQENPH*
BS12269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-PA | 469 | CG4781-PA | 1..469 | 1..469 | 2426 | 100 | Plus |
| caps-PB | 540 | CG11282-PB | 100..465 | 68..427 | 242 | 26.7 | Plus |
| caps-PA | 540 | CG11282-PA | 100..465 | 68..427 | 242 | 26.7 | Plus |
| caps-PD | 780 | CG11282-PD | 100..465 | 68..427 | 242 | 26.7 | Plus |
| caps-PE | 811 | CG11282-PE | 100..465 | 68..427 | 242 | 26.7 | Plus |
