BS12270.complete Sequence
542 bp assembled on 2006-11-01
GenBank Submission: FJ637124
> BS12270.complete
GAAGTTATCAGTCGACATGGTAGTGCTGAGCTCCTGCTGGTCGCCCATAA
TTTGGTCGGATAATGTCCGGACGGGAAGCTATGCCGTGGCCGGCTATACG
GCTGCGCTATCCGCCGTAATGATCACGCTGATTTCGTATATGCTAGCAGG
CGGGGAGTCTGCGCAGCTCTATTCCCCGCTCTTTGAGACGGATATACGTT
CGTCGATGCCCGTGGCAGGTGGCTTCTTTATCATCTACTTCCTGCTAATC
ATCCTGTCTTCCTATTTGGTCTACTACGGTATTAAGATCAGCACTCGAGG
ATGGCTGCTACCCTGGCTGGGTCTAATTGGACTAGCCATTCTCTTCCAGT
TTAGCTGGAGCCTTTGGCTTATTGGAGGCTACTATATTTATCTGGAGCAA
ACCTTCTCGGCCCTTTTGAACTTCGTTTGGGTAGCCTACAATATCTATTG
CTGGCTGGTGGTCTTCTCGCAGTACCAGATATTCCTGGAGATCCAGAATC
CGAACATTGAGCTGCTCATGCCATGAAAGCTTTCTAGACCAT
BS12270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-RB | 510 | CG7713-PB | 1..510 | 17..526 | 2550 | 100 | Plus |
CG7713-RA | 510 | CG7713-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-RB | 874 | CG7713-RB | 124..635 | 15..526 | 2560 | 100 | Plus |
CG7713-RA | 816 | CG7713-RA | 66..577 | 15..526 | 2560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17795363..17795639 | 15..291 | 1385 | 100 | Plus |
3R | 32079331 | 3R | 17795697..17795800 | 288..391 | 520 | 100 | Plus |
3R | 32079331 | 3R | 17795995..17796078 | 443..526 | 420 | 100 | Plus |
3R | 32079331 | 3R | 17795863..17795913 | 392..442 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:52:49 has no hits.
BS12270.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:39 Download gff for
BS12270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 1..510 | 17..526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:33 Download gff for
BS12270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 71..586 | 10..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:30 Download gff for
BS12270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 77..585 | 17..525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:40 Download gff for
BS12270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 71..586 | 10..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:18 Download gff for
BS12270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 68..576 | 17..525 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:18 Download gff for
BS12270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17795365..17795639 | 17..291 | 100 | -> | Plus |
3R | 17795701..17795800 | 292..391 | 100 | -> | Plus |
3R | 17795863..17795913 | 392..442 | 100 | -> | Plus |
3R | 17795995..17796077 | 443..525 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:30 Download gff for
BS12270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13621087..13621361 | 17..291 | 100 | -> | Plus |
arm_3R | 13621423..13621522 | 292..391 | 100 | -> | Plus |
arm_3R | 13621585..13621635 | 392..442 | 100 | -> | Plus |
arm_3R | 13621717..13621799 | 443..525 | 100 | | Plus |
BS12270.pep Sequence
Translation from 16 to 525
> BS12270.pep
MVVLSSCWSPIIWSDNVRTGSYAVAGYTAALSAVMITLISYMLAGGESAQ
LYSPLFETDIRSSMPVAGGFFIIYFLLIILSSYLVYYGIKISTRGWLLPW
LGLIGLAILFQFSWSLWLIGGYYIYLEQTFSALLNFVWVAYNIYCWLVVF
SQYQIFLEIQNPNIELLMP*
BS12270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-PB | 169 | CG7713-PB | 1..169 | 1..169 | 886 | 100 | Plus |
CG7713-PA | 169 | CG7713-PA | 1..169 | 1..169 | 886 | 100 | Plus |