BS12271.complete Sequence
1607 bp assembled on 2006-11-01
GenBank Submission: FJ637125
> BS12271.complete
GAAGTTATCAGTCGACATGCTTAAAAAAATTGCATTGTTTCTTATTATCT
GGAGTTGCGGCACATTGGCTGCGGACATCCTAATGGCTACGCAAGGCGGA
ACGAAGTCACACAAGATACCATTCTGGGAATTGGCTAAGGGATTAATATC
CAGAGGTCACAATATTACCTTTTTAAGTGGATTTCCTGCTGATTTTAATA
TTGAAGGACTGCTCGAGGTAACACCAGCTGGTCTTGTTGAATATATCCAC
AACTATACGAATTGGGATCTCTTGGGCTCACGCATGGCGGGAGAAATGCC
CATTAAGCCCTGGGACGGACTGCGATACGCTTTCGAATCATGTGACGCAA
TGCTTCGTGACTCAGAAACAAAGGAGCTGACCAAGAAAAGCTTTGATTTG
GCTATATTAGATGGAGCTTTCCCAGAGTGCTTCTTGGGATTAATGTACGA
CTTCAAGATTCCATTTATGTACATAAACACGGTGGGATTCTACACAGGCA
GTATCTCGACTGCAGGAAATCCCGTTAGCTACGCTATTACTCCCAACTTC
TATTCTCGATTTACGGACACAATGAATCTTTACGAACGTGCTATTAATAC
GGCCATGCAGATTGGACAAACACTGATGCACATGTATGTTATGCGTCGGA
CTCACCTTGTGATGCGAGAGCACTTGGGTACTCAAATCCCGCATCCTTAC
GAAATGTCGCGCAACGTGAGTTTCATTTTGCAAAATGGACACGCAGTTTT
GTCTTATCCTAGAGCCTTTAATCCGAATGTAGCAGAAGTGGCTTGCATTC
ATTGTAGGCCAGCTAGAAAACTTCCTAGAAACCTTGAGGAATTCATCGGT
GCTTCTGGAGCATCTGGATTTATTTACGTTTCTATGGGTTCCTCCGTAAA
GGCCGCGAACATGCCAGAGGCGTTGCGTCACATGCTTGTAAAGACCTTTG
CACGTCTTCCCTATCATGTGCTATGGAAGTATGAAGGCAGTTCGACAGAT
ATAAAAGACATCACATCAAACGTAAAACTTTCACGGTGGTTACCGCAGCA
GGACATTTTGGGACATCCCAAGCTTAGAGCGTTTGTAACACATGGAGGCT
TGCTAAGCATGTTTGAGACGGTATATCACGGAGTACCCGTTGTTACAATG
CCGGTATTCTGCGACCACGATGTTAACTCAGCCAAGGCCGAGGTCGATGG
ATATGCAATAAAGTTAGATCTTCAGACGCTGTCAGCCAATCAGTTGTACA
AGGCTATTATGAAAGTGATTCACAATCCTCGCTACAGAAATTCAGCACGA
CATCGGCAAAAGCTGTTCCTGGACCAGCGCTCAACAGCGCTAGATACTGC
CATATACTGGACCGAATATGTGCTGCGACATAATGGCGCTTATCATCTAC
AGACTCCATCCCGAAATATGACATGGTGGCAATACTACTTACTCGACGTA
GTTGCGGTTTATTTAATTTTACTTTACGTCCTGATCTTAGCACTGAGGCG
CATTGATTTTCCATACGAGAAGGTGCGGAGTCTTTATTCCCTTATGGCTC
CTTTTATTACAATAGCAAAAACGAAGTCAAAGAAGATTTAAAAGCTTTCT
AGACCAT
BS12271.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 1575 | CG30438-PE | 1..1575 | 17..1591 | 7875 | 100 | Plus |
| CG30438-RD | 1575 | CG30438-PD | 1..1575 | 17..1591 | 7875 | 100 | Plus |
| CG30438-RC | 1575 | CG30438-PC | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 2226 | CG30438-RE | 103..1689 | 15..1601 | 7905 | 99.9 | Plus |
| CG30438-RD | 2310 | CG30438-RD | 187..1773 | 15..1601 | 7905 | 99.9 | Plus |
| CG30438-RC | 2732 | CG30438-RC | 609..2195 | 15..1601 | 7905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5547987..5548775 | 634..1422 | 3945 | 100 | Plus |
| 2R | 25286936 | 2R | 5547628..5547924 | 338..634 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 5539243..5539429 | 151..337 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 5548828..5549006 | 1423..1601 | 865 | 98.9 | Plus |
| 2R | 25286936 | 2R | 5267417..5267669 | 1277..1016 | 780 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5267807..5268042 | 591..338 | 755 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5527295..5527376 | 15..96 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 5528754..5528813 | 94..153 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 5267673..5267723 | 986..936 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:24:11 has no hits.
BS12271.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:41 Download gff for
BS12271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RD | 1..1575 | 17..1591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:29 Download gff for
BS12271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RD | 169..1741 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:50 Download gff for
BS12271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 611..2183 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:41 Download gff for
BS12271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RD | 161..1757 | 7..1607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:18 Download gff for
BS12271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 611..2183 | 17..1589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:18 Download gff for
BS12271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5527297..5527375 | 17..95 | 100 | -> | Plus |
| 2R | 5528756..5528813 | 96..153 | 100 | -> | Plus |
| 2R | 5539246..5539429 | 154..337 | 100 | -> | Plus |
| 2R | 5547628..5547924 | 338..634 | 100 | -> | Plus |
| 2R | 5547988..5548775 | 635..1422 | 100 | -> | Plus |
| 2R | 5548828..5548994 | 1423..1589 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:50 Download gff for
BS12271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1414802..1414880 | 17..95 | 100 | -> | Plus |
| arm_2R | 1416261..1416318 | 96..153 | 100 | -> | Plus |
| arm_2R | 1426751..1426934 | 154..337 | 100 | -> | Plus |
| arm_2R | 1435133..1435429 | 338..634 | 100 | -> | Plus |
| arm_2R | 1435493..1436280 | 635..1422 | 100 | -> | Plus |
| arm_2R | 1436333..1436499 | 1423..1589 | 100 | | Plus |
BS12271.pep Sequence
Translation from 16 to 1590
> BS12271.pep
MLKKIALFLIIWSCGTLAADILMATQGGTKSHKIPFWELAKGLISRGHNI
TFLSGFPADFNIEGLLEVTPAGLVEYIHNYTNWDLLGSRMAGEMPIKPWD
GLRYAFESCDAMLRDSETKELTKKSFDLAILDGAFPECFLGLMYDFKIPF
MYINTVGFYTGSISTAGNPVSYAITPNFYSRFTDTMNLYERAINTAMQIG
QTLMHMYVMRRTHLVMREHLGTQIPHPYEMSRNVSFILQNGHAVLSYPRA
FNPNVAEVACIHCRPARKLPRNLEEFIGASGASGFIYVSMGSSVKAANMP
EALRHMLVKTFARLPYHVLWKYEGSSTDIKDITSNVKLSRWLPQQDILGH
PKLRAFVTHGGLLSMFETVYHGVPVVTMPVFCDHDVNSAKAEVDGYAIKL
DLQTLSANQLYKAIMKVIHNPRYRNSARHRQKLFLDQRSTALDTAIYWTE
YVLRHNGAYHLQTPSRNMTWWQYYLLDVVAVYLILLYVLILALRRIDFPY
EKVRSLYSLMAPFITIAKTKSKKI*
BS12271.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-PE | 524 | CG30438-PE | 1..524 | 1..524 | 2763 | 100 | Plus |
| CG30438-PD | 524 | CG30438-PD | 1..524 | 1..524 | 2763 | 100 | Plus |
| CG30438-PC | 524 | CG30438-PC | 1..524 | 1..524 | 2763 | 100 | Plus |
| CG30438-PB | 524 | CG30438-PB | 1..524 | 1..524 | 2763 | 100 | Plus |
| CG30438-PA | 435 | CG30438-PA | 1..435 | 90..524 | 2292 | 100 | Plus |
