BS12272.complete Sequence
1214 bp assembled on 2006-11-01
GenBank Submission: FJ637126
> BS12272.complete
GAAGTTATCAGTCGACATGCTGCGATTGCTCCAGAAGAGAACCAATCTCA
TAAAGCTAGTAGTACCCGGCCCCCGACTTCACCAGACGATTGCGCAAACA
GCGATAAAGGAAATCCCAGTGATAAAGCCCATCAGCACTCCGAAAAGCGA
CAAGACCGTCGGAAGATGGTTCCTGGGAGTCAGCGGCATGGTCTTCGTGG
CCGTTGGTCTAGGCGGAGTAACCCGACTGACAGAGTCCGGACTGTCCATG
GTCACTTGGAAGCTGACGGGTGAACGTATGCCCCGAACCCAGGAGGAATG
GGTGCAGGAGTTCAATCTCTACCAGCAATACCCAGAGTACAAGCTAAAGA
ATGTGAATATGACCGTGGAGGAGTTCAAGTTCATTTTCATGATGGAGTAC
ATGCACAGGATGTGGGGTCGTGCCATCGGCGGGTTCTTCCTTTTGCCCGC
TGTTTACTTCTGGAGAAAGGGATACTTCTGTGCGAAGACCAAGAAGAGCG
TCCTGCTGCTGGGCACACTGATTGGCCTGCAAGGTCTGATGGGATGGTAC
ATGGTCAAGTCCGGGCTGGAAGACAGGTTCCAGGATCCCAACGACGTGCC
ACGGGTATCCCAGTATAGATTGGCCTCCCACCTGGCAGCTGCCTTCGTCC
TGTACTCACTCTCCCTGTCAAAGGCCATGTCCCTGCTCATCCCCACGAAC
ACATTCGTGATCCAAGCCAAGAAAGCATTTAATATCAAGGGGCTGACGCA
TTTGACGAAGGCAATGGTCCTGCTGACTGCCATTTCTGGAGCCTTTGTAG
CCGGACTAGACGCCGGACTCGTGTACAACTCGTTCCCGAAGATGGGCGAC
AAGTGGATTCCCGATGACATGTGGACGTTTGCGCCCATACAGAAGAACAT
CACCGAGAATCCGACGACGGTGCAGTTCAATCACCGCATCCTTGGTATTA
GCACAGTAACGCTGACCACCGCTCTGTGGCTGGTCACCAGAAGGATGCAG
TTGCCCAAGCGCGCCAACTGGGCCATCAACGCCGTGGTGGCTATGGCCTG
GACGCAGGCCACGCTTGGCGTAACCACCTTGCTTAACTACGTGCCCGTGC
CTCTGGCAACGGCCCACCAGTCGGGCTCGCTTATTCTGCTGAGTTTCGCA
TTGTGGCTGTCGCACGAGGTTCGACTGTTGAAGTACCTTCCGAAGTAAAA
GCTTTCTAGACCAT
BS12272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3803-RA | 1182 | CG3803-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3803-RA | 1340 | CG3803-RA | 134..1316 | 17..1199 | 5915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23952537..23953390 | 1199..346 | 4270 | 100 | Minus |
| 2R | 25286936 | 2R | 23953449..23953583 | 345..211 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 23953638..23953743 | 213..108 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 23953822..23953915 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:08 has no hits.
BS12272.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:32 Download gff for
BS12272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 1..1182 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:22 Download gff for
BS12272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 97..1283 | 9..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:09 Download gff for
BS12272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 125..1304 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:32 Download gff for
BS12272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 97..1283 | 9..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:04 Download gff for
BS12272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 134..1313 | 17..1196 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:04 Download gff for
BS12272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23953449..23953581 | 213..345 | 100 | <- | Minus |
| 2R | 23953639..23953741 | 110..212 | 100 | <- | Minus |
| 2R | 23953823..23953915 | 17..109 | 100 | | Minus |
| 2R | 23952540..23953390 | 346..1196 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:09 Download gff for
BS12272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19840063..19840913 | 346..1196 | 100 | <- | Minus |
| arm_2R | 19840972..19841104 | 213..345 | 100 | <- | Minus |
| arm_2R | 19841162..19841264 | 110..212 | 100 | <- | Minus |
| arm_2R | 19841346..19841438 | 17..109 | 100 | | Minus |
BS12272.pep Sequence
Translation from 16 to 1197
> BS12272.pep
MLRLLQKRTNLIKLVVPGPRLHQTIAQTAIKEIPVIKPISTPKSDKTVGR
WFLGVSGMVFVAVGLGGVTRLTESGLSMVTWKLTGERMPRTQEEWVQEFN
LYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAIGGFFLLPAVYFWR
KGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRVSQY
RLASHLAAAFVLYSLSLSKAMSLLIPTNTFVIQAKKAFNIKGLTHLTKAM
VLLTAISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPT
TVQFNHRILGISTVTLTTALWLVTRRMQLPKRANWAINAVVAMAWTQATL
GVTTLLNYVPVPLATAHQSGSLILLSFALWLSHEVRLLKYLPK*
BS12272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3803-PA | 393 | CG3803-PA | 1..393 | 1..393 | 2038 | 100 | Plus |
