BS12273.complete Sequence
1637 bp assembled on 2008-08-14
GenBank Submission: FJ637127
> BS12273.complete
GAAGTTATCAGTCGACATGTCCAAGTTACCTTGCAGCTACGATGCGGAGA
ACAAGATCTGGAAGGGTATTCCGCAAAACAACCCCTTCAAGCCGGAGACC
TCCCTGGGTCGCATCATCTTCAAGAACATGAGGAACTGGCCCAAGAATGT
GTGTCAGATTTCCGACTCCGAGGGCGTGGAGGTCACCTTCGGACAGGCTC
TCACTTGGGCTATTCGCATTGCCCAGCAACTGAAGAGTCGCGGTCTCGAC
CACAAGGATATCATTGGTATCTCTGCCAGGAACACCACCTACATTATGCC
CACAGCCGTGGCCTGTTTCTTCCATGGCACTCCCTTCCAGTCGGCCAATC
CAATTCTCGAGGAATCTACTCTTAAGCACCTGTACAACATTTCCAAGCCG
AAGATTATCTTCACCGATGCCGATCACTACGACAAACTGTACTCGGCTAC
CAGCGCGTTCAAGCCAGAGATTATCCTAACCACCGGAACTAAGGATGGTG
TCCTTAGCATTCAGGATCTGTTGGCTCCAACAAAGACAGAGTTCTTCTAT
CAGCCCACACCGCTGAAGGAAGGACCTTCGCAAACCGTTGCGATCCTCAC
CTCATCCGGAACTACTGGAATGCCCAAGGCTGTGTGCATCTCGAACGATA
TTCTGACCCAAGAGACAGTCTTTGTAAATGGTTACGATACCATCTTCATT
TCGGCCAGTTTGGACTGGATTACTGGGCTGTGGGCCACCATCTTCAGCAC
GGTTAACGGTTGCACCAGGATCATCAGCAGTAAGCCCTTCGCCGCGGACT
ACTTTGTGTACTTAGTGAGCAAGTACAGCATCACATATGCACTGATTCCG
CCGGAGCACTGCTGTTCCTTGCTGGATTGCCCCACAGCCACTCCGGAGAA
GTTGGGCAGCCTGACGAAGCTGAATTTCGGAGGCGGACGGATGACTCAGG
CCACGGTTGAGAGGGTCAAGAAGCTTGCTCCTAATGGAGTGCTGAACTCG
TCCTACGGCATGACTGAGGTTGGATTCATAGTGTTCAACCACGGACACTT
GAAACTCACCGCTGCGGGCAACCCATTGCCCGGAATTCAGGTGAAGATCG
TGGACGACGATGGCAACCAACTGGGTGTGAACCAGACCGGCGAGATCATT
GTGCACAATGGATTTAGCTGGAACGGATACTTTGCCGATCCGGAGGCCAC
CAAGGCGATGCAGGACGAGGAGGGCTGGTTCCACACGGGCGACATGGGCT
ACTTCGACGAGGACGACTACCTCTACATGACGGACCGCAAAAAGGAGGTG
CTCAAGTGGAAGGGTCTGCAGATGTGGCCTGCCGAGGTGGAGGCGGTCAT
CGACGAGCTGCCGGAGGTGAAGCGGGTGTGCGTGATCGGGGTGTACGACG
AGACCCAGGGAGATGTGCCTGGTGCCCTGGTTGTGCGGGAGGATAATGCC
ACTCTGACCGCACAGCAGGTGATTGACCACGTGGCCAAGCGACTGCCCGA
CATCCAGAAGCAGCTGCGAGCTGGTGTCCAGTTCGCCGATGAGATTCCCC
AGAACCACAATGGCAAGGTCGTCCGCCGATACGCCCGCGATCTCTTCGTC
GCCTTGTCCAAGAAGAACTGAAAGCTTTCTAGACCAT
BS12273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4830-RA | 1605 | CG4830-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
| CG8834-RA | 1608 | CG8834-PA | 97..335 | 113..351 | 310 | 75.3 | Plus |
| CG4563-RA | 1614 | CG4563-PA | 1208..1374 | 1218..1384 | 220 | 75.4 | Plus |
| CG8834-RA | 1608 | CG8834-PA | 1465..1523 | 1481..1539 | 205 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4830-RA | 1861 | CG4830-RA | 56..1662 | 17..1623 | 8035 | 100 | Plus |
| CG8834-RA | 1832 | CG8834-RA | 149..387 | 113..351 | 310 | 75.3 | Plus |
| CG4563-RA | 1766 | CG4563-RA | 1243..1409 | 1218..1384 | 220 | 75.4 | Plus |
| CG8834-RA | 1832 | CG8834-RA | 1517..1575 | 1481..1539 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12208358..12209311 | 1623..670 | 4770 | 100 | Minus |
| 3R | 32079331 | 3R | 12209882..12210097 | 369..154 | 1065 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12209586..12209773 | 553..366 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 12210165..12210305 | 157..17 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 12209401..12209517 | 669..553 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 24451441..24451607 | 1384..1218 | 220 | 75.4 | Minus |
| 2R | 25286936 | 2R | 12420732..12420790 | 1539..1481 | 205 | 89.8 | Minus |
| 2R | 25286936 | 2R | 12422094..12422263 | 351..182 | 190 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:51:01 has no hits.
BS12273.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:18 Download gff for
BS12273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4830-RA | 39..1659 | 5..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:44 Download gff for
BS12273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4830-RA | 56..1659 | 17..1620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:17 Download gff for
BS12273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4830-RA | 53..1656 | 17..1620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:57 Download gff for
BS12273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4830-RA | 56..1659 | 17..1620 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:57 Download gff for
BS12273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12208361..12209311 | 670..1620 | 100 | <- | Minus |
| 3R | 12209401..12209517 | 553..669 | 100 | <- | Minus |
| 3R | 12209587..12209773 | 366..552 | 100 | <- | Minus |
| 3R | 12209886..12210093 | 158..365 | 100 | <- | Minus |
| 3R | 12210165..12210305 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:44 Download gff for
BS12273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8034083..8035033 | 670..1620 | 100 | <- | Minus |
| arm_3R | 8035123..8035239 | 553..669 | 100 | <- | Minus |
| arm_3R | 8035309..8035495 | 366..552 | 100 | <- | Minus |
| arm_3R | 8035608..8035815 | 158..365 | 100 | <- | Minus |
| arm_3R | 8035887..8036027 | 17..157 | 100 | | Minus |
BS12273.pep Sequence
Translation from 16 to 1620
> BS12273.pep
MSKLPCSYDAENKIWKGIPQNNPFKPETSLGRIIFKNMRNWPKNVCQISD
SEGVEVTFGQALTWAIRIAQQLKSRGLDHKDIIGISARNTTYIMPTAVAC
FFHGTPFQSANPILEESTLKHLYNISKPKIIFTDADHYDKLYSATSAFKP
EIILTTGTKDGVLSIQDLLAPTKTEFFYQPTPLKEGPSQTVAILTSSGTT
GMPKAVCISNDILTQETVFVNGYDTIFISASLDWITGLWATIFSTVNGCT
RIISSKPFAADYFVYLVSKYSITYALIPPEHCCSLLDCPTATPEKLGSLT
KLNFGGGRMTQATVERVKKLAPNGVLNSSYGMTEVGFIVFNHGHLKLTAA
GNPLPGIQVKIVDDDGNQLGVNQTGEIIVHNGFSWNGYFADPEATKAMQD
EEGWFHTGDMGYFDEDDYLYMTDRKKEVLKWKGLQMWPAEVEAVIDELPE
VKRVCVIGVYDETQGDVPGALVVREDNATLTAQQVIDHVAKRLPDIQKQL
RAGVQFADEIPQNHNGKVVRRYARDLFVALSKKN*
BS12273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4830-PA | 534 | CG4830-PA | 1..534 | 1..534 | 2823 | 100 | Plus |
| CG8834-PA | 535 | CG8834-PA | 1..530 | 1..530 | 1681 | 56.4 | Plus |
| CG11453-PA | 539 | CG11453-PA | 1..531 | 1..533 | 1187 | 42.4 | Plus |
| CG4563-PA | 537 | CG4563-PA | 8..529 | 5..527 | 1140 | 42.3 | Plus |
| CG11407-PA | 538 | CG11407-PA | 9..531 | 8..528 | 955 | 37.8 | Plus |
