BS12275.complete Sequence
1310 bp assembled on 2006-11-01
GenBank Submission: FJ637128
> BS12275.complete
GAAGTTATCAGTCGACATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAG
ACACCAGTACGGGCAGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAA
CGTCAACAAACCAAATCGGAGGCCAAGAAGCAGAACTATGTGGATCACAT
CGTCAGTGTGCAGCAAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGAC
TTGAAGAGGAGCTCCGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCG
CTGCCGCAGCTGCCGGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCT
GGCTAGCACCCACTCGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCA
GATCGAACAGTAATCTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAG
GGCACCAAGTCGACGTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAG
CAGCTGTTGCTATTCGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGC
AGGACTGCCTGAGCAACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGT
ACAAGCGATCTGCCCGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGAT
AGCCAACTACGAAGATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACT
ACGACCAGAGTCTAGAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGC
AACTACCTGACCATGACGGGCACCATTAAGCGGGGTCGCAAGAAGGGCCA
GTCCGTGGACCTACAGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGA
ACGCCCATGCGATGGCCAGCGACACACAGAAGGGTGGCAATTTGTGCTGC
ACCTGCAGCTGTGGCACCGGCCTCCACATCCTGCTCATCTCGCTCTTTTG
CCTGCCGTTTGTGACCGTCGTTTCGGCGGTATACTCCTTCTACATTGGAA
CGCTCACCTGGTACAATATGTTCAACTATTACTGCGAGGAGAGGACGTAC
CTGCACAAGATCCTGGTGACGCCGCTGCTGTTCGTGATCTATCCGCTGGC
CATCGTGCTGTGCACCTTCGGACTGGGCATCTACTCGGGATTGCGGCAGC
TGAGTCTGCAGTACAGCAGTTGGGTGAACGACATCACGGATATCGAGAAG
GGATTCTACGGCTGGTTGTGCGGATTCCTTCGCATGCCCGACTGCAGTCC
CTACGAGGTCGTCATCCTGACCGACATTTGTGTTGCGCCGCAGGATCCCC
AGCGGCTGCACATCAACAAACCGCGCCAGGAACTATCCATGTAGAAGCTT
TCTAGACCAT
BS12275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4596-RA | 1278 | CG4596-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4596-RA | 2357 | CG4596-RA | 155..1432 | 17..1294 | 6390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10873522..10874657 | 159..1294 | 5680 | 100 | Plus |
| 3R | 32079331 | 3R | 10873192..10873338 | 17..163 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:37:59 has no hits.
BS12275.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:26 Download gff for
BS12275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 1..1278 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:16 Download gff for
BS12275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 153..1430 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:46 Download gff for
BS12275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 155..1432 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:26 Download gff for
BS12275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 153..1430 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:37 Download gff for
BS12275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 155..1432 | 17..1294 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:37 Download gff for
BS12275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10873192..10873338 | 17..163 | 100 | -> | Plus |
| 3R | 10873527..10874657 | 164..1294 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:46 Download gff for
BS12275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6698914..6699060 | 17..163 | 100 | -> | Plus |
| arm_3R | 6699249..6700379 | 164..1294 | 100 | | Plus |
BS12275.pep Sequence
Translation from 16 to 1293
> BS12275.pep
MVGKGSSGLGGDTSTGSKERPVFIPPRKRQQTKSEAKKQNYVDHIVSVQQ
NRPKLSPSNPGLEEELRKSKLIIKNKQPLPQLPGELGVPSAHDTLASTHS
ASSTQHSQKSARSNSNLNELQNFESISQGTKSTSQRHESSTVTPSSCCYS
ESSLDAKLSKSQDCLSNRSSSKKRVNIRTSDLPGQGRNQRSSPEIANYED
LESGETSVLNNYDQSLERGYQARKEGGGNYLTMTGTIKRGRKKGQSVDLQ
INISREELEQLNAHAMASDTQKGGNLCCTCSCGTGLHILLISLFCLPFVT
VVSAVYSFYIGTLTWYNMFNYYCEERTYLHKILVTPLLFVIYPLAIVLCT
FGLGIYSGLRQLSLQYSSWVNDITDIEKGFYGWLCGFLRMPDCSPYEVVI
LTDICVAPQDPQRLHINKPRQELSM*
BS12275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4596-PA | 425 | CG4596-PA | 1..425 | 1..425 | 2221 | 100 | Plus |
