Clone BS12276 Report

Search the DGRC for BS12276

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:122
Well:76
Vector:pDNR-Dual
Associated Gene/TranscripteIF-1A-RA
Protein status:BS12276.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12276.complete Sequence

479 bp assembled on 2006-11-01

GenBank Submission: FJ637129

> BS12276.complete
GAAGTTATCAGTCGACATGCCCAAGAATAAAGGAAAAGGAGGCAAGAATC
GTCGTCGTGGTAAGAACGAGAACGAGTTCGAGAAGCGTGAGCTGATCTTC
AAGGAGGACCAACAGGAGTACGCGCAGGTGACCAAGATGCTGGGCAACGG
TCGTCTGGAGGCAATGTGCTTTGATGGCGTCAAACGCCTGTGTCACATTC
GGGGGAAACTTCGCAAGAAGGTGTGGATTAACCAGGGCGACATCATATTG
GTGGGCTTGCGTGACTACCAGGACTCGAAGGCTGATGTGATCCTCAAATA
CACACCGGACGAGGCCAGGAACCTGAAGACGTACGGCGAGTTCCCCGAGT
CGGTGCGCATCAACGAGACAGTCACATTCGTGGAGGATGGCTTCGACGAG
GACATCGAGTTCGGCGATGAGATCAGCTCCGAGGATGACGCCGACTCCGT
GGACAACATCTGAAAGCTTTCTAGACCAT

BS12276.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-1A-RC 447 CG8053-PC 1..447 17..463 2235 100 Plus
eIF-1A-RB 447 CG8053-PB 1..447 17..463 2235 100 Plus
eIF-1A-RA 447 CG8053-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-1A-RC 1646 CG8053-RC 131..577 17..463 2235 100 Plus
eIF-1A-RB 1199 CG8053-RB 205..651 17..463 2235 100 Plus
eIF-1A-RA 1158 CG8053-RA 164..610 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18281692..18281936 219..463 1225 100 Plus
3R 32079331 3R 18274938..18275144 17..223 1035 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:34:39 has no hits.

BS12276.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:27 Download gff for BS12276.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RB 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:17 Download gff for BS12276.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RB 197..651 9..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:22 Download gff for BS12276.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RA 164..609 17..462 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:27 Download gff for BS12276.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RB 197..651 9..463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:42 Download gff for BS12276.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RA 164..609 17..462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:42 Download gff for BS12276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18274938..18275141 17..220 100 -> Plus
3R 18281694..18281935 221..462 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:22 Download gff for BS12276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14100660..14100863 17..220 100 -> Plus
arm_3R 14107416..14107657 221..462 100   Plus

BS12276.pep Sequence

Translation from 16 to 462

> BS12276.pep
MPKNKGKGGKNRRRGKNENEFEKRELIFKEDQQEYAQVTKMLGNGRLEAM
CFDGVKRLCHIRGKLRKKVWINQGDIILVGLRDYQDSKADVILKYTPDEA
RNLKTYGEFPESVRINETVTFVEDGFDEDIEFGDEISSEDDADSVDNI*

BS12276.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-1A-PC 148 CG8053-PC 1..148 1..148 777 100 Plus
eIF-1A-PB 148 CG8053-PB 1..148 1..148 777 100 Plus
eIF-1A-PA 148 CG8053-PA 1..148 1..148 777 100 Plus